Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF541 and GFF542 are separated by 87 nucleotides GFF542 and GFF543 are separated by 60 nucleotides
GFF541 - ABC transporter permease protein, at 209,773 to 210,771
GFF541
GFF542 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 210,859 to 212,154
GFF542
GFF543 - ABC transporter ATP-binding protein, at 212,215 to 213,240
GFF543
Position (kb) 210
211
212
213 Strain fitness (log2 ratio) -1
0
1
2 at 209.879 kb on + strand, within GFF541 at 209.879 kb on + strand, within GFF541 at 209.880 kb on - strand, within GFF541 at 210.135 kb on - strand, within GFF541 at 210.362 kb on + strand, within GFF541 at 210.431 kb on + strand, within GFF541 at 210.431 kb on + strand, within GFF541 at 210.432 kb on - strand, within GFF541 at 210.432 kb on - strand, within GFF541 at 210.534 kb on - strand, within GFF541 at 210.897 kb on - strand at 210.897 kb on - strand at 211.047 kb on - strand, within GFF542 at 211.100 kb on + strand, within GFF542 at 211.101 kb on - strand, within GFF542 at 211.103 kb on + strand, within GFF542 at 211.163 kb on + strand, within GFF542 at 211.164 kb on - strand, within GFF542 at 211.454 kb on + strand, within GFF542 at 211.622 kb on + strand, within GFF542 at 211.622 kb on + strand, within GFF542 at 211.851 kb on - strand, within GFF542 at 211.851 kb on - strand, within GFF542 at 211.928 kb on + strand, within GFF542 at 211.928 kb on + strand, within GFF542 at 212.291 kb on + strand at 212.291 kb on + strand at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.381 kb on + strand, within GFF543 at 212.382 kb on - strand, within GFF543 at 212.382 kb on - strand, within GFF543 at 212.382 kb on - strand, within GFF543 at 212.394 kb on - strand, within GFF543 at 212.552 kb on + strand, within GFF543 at 212.553 kb on - strand, within GFF543 at 212.553 kb on - strand, within GFF543 at 212.553 kb on - strand, within GFF543 at 213.125 kb on + strand, within GFF543 at 213.126 kb on - strand, within GFF543 at 213.126 kb on - strand, within GFF543 at 213.126 kb on - strand, within GFF543
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 209,879 + GFF541 0.11 -0.8 209,879 + GFF541 0.11 +1.5 209,880 - GFF541 0.11 +0.3 210,135 - GFF541 0.36 -0.2 210,362 + GFF541 0.59 +0.7 210,431 + GFF541 0.66 +0.1 210,431 + GFF541 0.66 -0.8 210,432 - GFF541 0.66 -0.7 210,432 - GFF541 0.66 +0.9 210,534 - GFF541 0.76 +0.0 210,897 - +1.8 210,897 - +0.1 211,047 - GFF542 0.15 +0.8 211,100 + GFF542 0.19 -0.6 211,101 - GFF542 0.19 +1.1 211,103 + GFF542 0.19 +0.4 211,163 + GFF542 0.23 +0.6 211,164 - GFF542 0.24 +0.4 211,454 + GFF542 0.46 +0.4 211,622 + GFF542 0.59 +0.7 211,622 + GFF542 0.59 -0.6 211,851 - GFF542 0.77 +0.6 211,851 - GFF542 0.77 -0.1 211,928 + GFF542 0.82 +0.4 211,928 + GFF542 0.82 -0.3 212,291 + +0.4 212,291 + +0.2 212,381 + GFF543 0.16 -0.1 212,381 + GFF543 0.16 +0.0 212,381 + GFF543 0.16 -0.0 212,381 + GFF543 0.16 +0.8 212,381 + GFF543 0.16 +0.9 212,381 + GFF543 0.16 -0.1 212,381 + GFF543 0.16 +0.7 212,381 + GFF543 0.16 +0.2 212,381 + GFF543 0.16 +0.2 212,381 + GFF543 0.16 -0.2 212,381 + GFF543 0.16 +0.8 212,381 + GFF543 0.16 -0.4 212,382 - GFF543 0.16 -0.0 212,382 - GFF543 0.16 -0.0 212,382 - GFF543 0.16 -0.3 212,394 - GFF543 0.17 +0.8 212,552 + GFF543 0.33 -0.1 212,553 - GFF543 0.33 +0.1 212,553 - GFF543 0.33 +0.4 212,553 - GFF543 0.33 +0.1 213,125 + GFF543 0.89 +1.3 213,126 - GFF543 0.89 +1.3 213,126 - GFF543 0.89 +0.1 213,126 - GFF543 0.89 +0.8
Or see this region's nucleotide sequence