Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4969

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
1,986,001	-		GFF4968	0.72	-1.7
1,986,001	-		GFF4968	0.72	+0.2
1,986,042	+		GFF4968	0.76	+0.4
1,986,042	+		GFF4968	0.76	-0.6
1,986,042	+		GFF4968	0.76	+0.2
1,986,043	-		GFF4968	0.76	+0.1
1,986,141	+		GFF4968	0.83	+0.2
1,986,141	+		GFF4968	0.83	-0.7
1,986,141	+		GFF4968	0.83	+0.0
1,986,187	-		GFF4968	0.86	-0.5
1,986,187	-		GFF4968	0.86	-1.0
1,986,187	-		GFF4968	0.86	+0.8
1,986,403	+				-0.3
1,986,449	+				+4.1
1,986,450	-				+0.3
1,986,461	-				-0.1
1,986,491	-				+0.9
1,986,594	+				-0.4
1,986,594	+				+2.3
1,986,595	-				+0.1
1,986,595	-				-0.3
1,986,806	-				+0.6
1,986,941	-		GFF4969	0.12	+0.5
1,986,941	-		GFF4969	0.12	+0.1
1,987,156	+		GFF4969	0.23	+0.7
1,987,157	-		GFF4969	0.23	+0.1
1,987,402	+		GFF4969	0.35	+1.2
1,987,402	+		GFF4969	0.35	-2.3
1,987,403	-		GFF4969	0.35	+0.5
1,987,472	-		GFF4969	0.38	+0.3
1,987,601	-		GFF4969	0.45	-0.9
1,988,014	+		GFF4969	0.65	+0.1
1,988,015	-		GFF4969	0.65	-0.3
1,988,752	-				+0.1
1,988,755	+				-0.1
1,988,756	-				-1.5
1,988,756	-				+0.4
1,989,040	+		GFF4970	0.46	-0.0
1,989,041	-		GFF4970	0.46	-0.1
1,989,041	-		GFF4970	0.46	+0.0
1,989,041	-		GFF4970	0.46	+0.3
1,989,595	+		GFF4971	0.18	+0.1
1,989,596	+		GFF4971	0.18	-2.1
1,989,596	-		GFF4971	0.18	-0.6
1,989,596	-		GFF4971	0.18	-0.9
1,989,596	-		GFF4971	0.18	-0.9