Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4863

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4862 and GFF4863 are separated by 49 nucleotidesGFF4863 and GFF4864 overlap by 4 nucleotidesGFF4864 and GFF4865 are separated by 25 nucleotides GFF4862 - Histidyl-tRNA synthetase (EC 6.1.1.21), at 1,868,648 to 1,869,952 GFF4862 GFF4863 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1), at 1,870,002 to 1,871,288 GFF4863 GFF4864 - FIG021952: putative membrane protein, at 1,871,285 to 1,872,163 GFF4864 GFF4865 - Type IV pilus biogenesis protein PilF, at 1,872,189 to 1,873,055 GFF4865 Position (kb) 1870 1871 1872Strain fitness (log2 ratio) -1 0 1at 1871.322 kb on + strandat 1871.395 kb on - strand, within GFF4864at 1871.395 kb on - strand, within GFF4864at 1871.395 kb on - strand, within GFF4864at 1872.214 kb on + strandat 1872.215 kb on - strandat 1872.215 kb on - strandat 1872.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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1,871,322 + +0.7
1,871,395 - GFF4864 0.13 -0.6
1,871,395 - GFF4864 0.13 -0.1
1,871,395 - GFF4864 0.13 -0.5
1,872,214 + +0.3
1,872,215 - +0.4
1,872,215 - -0.2
1,872,215 - +0.3

Or see this region's nucleotide sequence