Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4774

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
1,783,402	-				+0.0
1,783,408	-				-0.7
1,783,413	+				+1.2
1,783,413	+				+0.6
1,783,414	-				-0.6
1,783,414	-				+0.0
1,783,623	+		GFF4773	0.30	-0.5
1,783,866	+		GFF4773	0.56	+1.1
1,783,866	+		GFF4773	0.56	-0.1
1,783,867	-		GFF4773	0.56	+0.3
1,783,867	-		GFF4773	0.56	-0.1
1,783,867	-		GFF4773	0.56	+0.5
1,784,321	-				-0.9
1,784,689	-		GFF4774	0.26	+0.8
1,784,689	-		GFF4774	0.26	+0.3
1,784,794	-		GFF4774	0.32	-0.1
1,785,312	+		GFF4774	0.66	+0.0
1,785,313	-		GFF4774	0.66	+0.9
1,785,313	-		GFF4774	0.66	-0.1
1,785,459	+		GFF4774	0.75	-0.9
1,785,459	+		GFF4774	0.75	-0.2
1,785,459	+		GFF4774	0.75	-0.3
1,785,459	+		GFF4774	0.75	+1.1
1,785,459	+		GFF4774	0.75	-0.9
1,785,460	-		GFF4774	0.75	+1.1
1,785,460	-		GFF4774	0.75	+0.1
1,785,693	+				-0.3
1,785,693	+				+0.0
1,785,693	+				+0.7
1,785,693	+				+0.0
1,785,693	+				-0.3
1,785,694	-				+0.4
1,785,694	-				+1.0
1,785,694	-				-0.6
1,785,714	+				-0.6
1,785,927	+				-0.4
1,785,928	-				-0.8
1,785,928	-				-1.5
1,785,928	-				+0.5
1,785,928	-				-0.3
1,785,928	-				+0.9
1,785,928	-				-0.2
1,786,026	+		GFF4775	0.16	+0.6
1,786,026	+		GFF4775	0.16	+0.3
1,786,026	+		GFF4775	0.16	-0.3
1,786,026	+		GFF4775	0.16	-0.1
1,786,027	-		GFF4775	0.16	-2.2
1,786,027	-		GFF4775	0.16	+0.1
1,786,027	-		GFF4775	0.16	-0.6
1,786,027	-		GFF4775	0.16	+0.1
1,786,027	-		GFF4775	0.16	-0.5
1,786,138	-		GFF4775	0.33	-0.1
1,786,191	+		GFF4775	0.42	+1.2
1,786,191	+		GFF4775	0.42	-0.2
1,786,192	-		GFF4775	0.42	-0.5
1,786,419	+		GFF4775	0.78	-0.6
1,786,419	+		GFF4775	0.78	+0.0
1,786,419	+		GFF4775	0.78	-0.2
1,786,419	+		GFF4775	0.78	-1.8
1,786,419	+		GFF4775	0.78	-0.0
1,786,420	-		GFF4775	0.78	-0.3
1,786,420	-		GFF4775	0.78	+0.2
1,786,420	-		GFF4775	0.78	-0.9
1,786,420	-		GFF4775	0.78	-0.2
1,786,420	-		GFF4775	0.78	-0.3
1,786,420	-		GFF4775	0.78	+1.1
1,786,425	+		GFF4775	0.78	-0.8
1,786,425	+		GFF4775	0.78	+0.1
1,786,426	-		GFF4775	0.79	-0.2
1,786,549	+				-0.5
1,786,550	-				-0.6
1,786,550	-				-0.6
1,786,550	-				-0.3
1,786,550	-				-0.8
1,786,617	+				+0.6
1,786,617	+				+0.4
1,786,617	+				+0.2
1,786,617	+				+1.4
1,786,617	+				-0.6
1,786,617	+				-2.2
1,786,618	-				-0.1
1,786,619	+				+0.0
1,786,619	+				+0.6
1,786,620	-				+0.5
1,786,620	-				-0.1
1,786,620	-				+0.5
1,786,649	+		GFF4776	0.24	+2.1
1,786,650	-		GFF4776	0.24	-0.9
1,786,650	-		GFF4776	0.24	-1.0
1,786,663	+		GFF4776	0.31	-0.8
1,786,664	-		GFF4776	0.31	+0.5
1,786,775	-		GFF4776	0.87	-0.1