Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4272

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
1,197,522	-		GFF4271	0.51	+0.7
1,197,522	-		GFF4271	0.51	+2.1
1,197,522	-		GFF4271	0.51	+1.0
1,197,653	+		GFF4271	0.59	+2.9
1,197,654	-		GFF4271	0.59	+2.1
1,197,908	+		GFF4271	0.74	+0.6
1,197,909	-		GFF4271	0.74	+0.7
1,197,909	-		GFF4271	0.74	+3.6
1,197,920	+		GFF4271	0.75	+2.3
1,197,920	+		GFF4271	0.75	+4.1
1,197,920	+		GFF4271	0.75	+0.8
1,197,920	+		GFF4271	0.75	+3.3
1,197,920	+		GFF4271	0.75	+1.5
1,198,013	+		GFF4271	0.81	+1.1
1,198,142	+		GFF4271	0.88	+1.6
1,198,142	+		GFF4271	0.88	+1.0
1,198,143	-		GFF4271	0.89	+1.5
1,198,143	-		GFF4271	0.89	+0.5
1,198,143	-		GFF4271	0.89	+0.7
1,198,143	-		GFF4271	0.89	+1.7
1,198,143	-		GFF4271	0.89	+1.5
1,198,238	+				+2.0
1,198,238	+				+3.1
1,198,239	-				+2.1
1,198,322	+				+2.6
1,198,322	+				+0.9
1,198,323	-				-0.4
1,198,355	+				-0.0
1,198,355	+				+0.6
1,198,356	-				-1.5
1,198,356	-				+0.4
1,198,369	+				+0.4
1,198,369	+				+0.0
1,198,369	+				-0.1
1,198,369	+				-0.8
1,198,369	+				-0.2
1,198,369	+				+0.7
1,198,540	-		GFF4272	0.40	-0.8
1,198,554	+		GFF4272	0.44	-1.0
1,198,554	+		GFF4272	0.44	-1.0
1,198,554	+		GFF4272	0.44	-0.7
1,198,554	+		GFF4272	0.44	-0.8
1,198,555	-		GFF4272	0.45	-1.2
1,198,555	-		GFF4272	0.45	-0.7
1,198,921	+		GFF4273	0.27	-0.6
1,198,921	+		GFF4273	0.27	-0.2
1,198,922	-		GFF4273	0.27	-0.1
1,198,922	-		GFF4273	0.27	-0.4
1,198,922	-		GFF4273	0.27	+0.2
1,198,922	-		GFF4273	0.27	+1.8
1,198,922	-		GFF4273	0.27	+0.5
1,198,922	-		GFF4273	0.27	-0.2
1,198,922	-		GFF4273	0.27	+0.4
1,199,224	+		GFF4273	0.79	-1.1
1,199,224	+		GFF4273	0.79	+0.3
1,199,225	-		GFF4273	0.79	-0.8
1,199,225	-		GFF4273	0.79	-0.2
1,199,317	+				-0.6
1,199,317	+				-0.3
1,199,317	+				-0.4
1,199,318	-				-0.1
1,199,318	-				-1.3
1,199,318	-				+0.7
1,199,318	-				-0.1
1,199,320	-				+0.2
1,199,682	+		GFF4274	0.81	+0.3
1,199,683	-		GFF4274	0.81	+0.7