Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4254

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
1,177,063	+		GFF4252	0.18	-0.4
1,177,063	+		GFF4252	0.18	-0.1
1,177,063	+		GFF4252	0.18	-0.8
1,177,063	+		GFF4252	0.18	-1.5
1,177,063	+		GFF4252	0.18	+0.3
1,177,064	-		GFF4252	0.19	+0.9
1,177,064	-		GFF4252	0.19	+0.0
1,177,064	-		GFF4252	0.19	+0.3
1,177,064	-		GFF4252	0.19	+0.2
1,177,064	-		GFF4252	0.19	+0.3
1,177,662	+		GFF4253	0.49	-1.2
1,177,662	+		GFF4253	0.49	-0.3
1,177,662	+		GFF4253	0.49	-0.6
1,177,662	+		GFF4253	0.49	-1.2
1,177,662	+		GFF4253	0.49	-2.0
1,177,662	+		GFF4253	0.49	-1.4
1,177,662	+		GFF4253	0.49	+0.1
1,177,663	-		GFF4253	0.49	-0.4
1,177,663	-		GFF4253	0.49	-0.2
1,177,663	-		GFF4253	0.49	-0.4
1,177,663	-		GFF4253	0.49	-3.1
1,177,663	-		GFF4253	0.49	-0.2
1,177,663	-		GFF4253	0.49	+0.1
1,177,663	-		GFF4253	0.49	-0.5
1,177,663	-		GFF4253	0.49	-0.5
1,177,663	-		GFF4253	0.49	-1.1
1,177,929	+				+1.4
1,177,929	+				-0.1
1,177,929	+				-0.1
1,177,929	+				-0.5
1,177,930	-				-1.1
1,177,930	-				+0.2
1,177,930	-				-0.0
1,177,930	-				-0.8
1,177,930	-				-0.5
1,177,930	-				-1.4
1,177,930	-				+0.7
1,178,036	+				+0.1
1,178,036	+				+0.9
1,178,321	+		GFF4254	0.77	-0.2
1,178,321	+		GFF4254	0.77	-0.6
1,178,321	+		GFF4254	0.77	-0.2
1,178,321	+		GFF4254	0.77	+0.5
1,178,321	+		GFF4254	0.77	-0.4
1,178,321	+		GFF4254	0.77	-0.3
1,178,321	+		GFF4254	0.77	-1.5
1,178,321	+		GFF4254	0.77	-0.8
1,178,321	+		GFF4254	0.77	-0.6
1,178,321	+		GFF4254	0.77	+1.2
1,178,321	+		GFF4254	0.77	-0.5
1,178,321	+		GFF4254	0.77	+0.3
1,178,322	-		GFF4254	0.77	-0.4
1,178,322	-		GFF4254	0.77	+0.0
1,178,322	-		GFF4254	0.77	+1.1
1,178,322	-		GFF4254	0.77	+1.3
1,178,322	-		GFF4254	0.77	-0.2
1,178,322	-		GFF4254	0.77	+0.1
1,178,322	-		GFF4254	0.77	-0.3
1,178,322	-		GFF4254	0.77	-0.2
1,178,322	-		GFF4254	0.77	-0.4
1,178,322	-		GFF4254	0.77	-0.3
1,178,333	+		GFF4254	0.80	+0.4
1,178,333	+		GFF4254	0.80	-0.5
1,178,333	+		GFF4254	0.80	+0.2
1,178,333	+		GFF4254	0.80	+0.8
1,178,333	+		GFF4254	0.80	-1.1
1,178,333	+		GFF4254	0.80	-0.3
1,178,333	+		GFF4254	0.80	-1.9
1,178,333	+		GFF4254	0.80	-0.1
1,178,333	+		GFF4254	0.80	-0.9
1,178,333	+		GFF4254	0.80	-0.5
1,178,333	+		GFF4254	0.80	-0.0
1,178,333	+		GFF4254	0.80	+0.9
1,178,333	+		GFF4254	0.80	-1.2
1,178,334	-		GFF4254	0.80	+0.4
1,178,334	-		GFF4254	0.80	+1.3
1,178,334	-		GFF4254	0.80	+1.5
1,178,334	-		GFF4254	0.80	-0.1
1,178,334	-		GFF4254	0.80	-0.2
1,178,334	-		GFF4254	0.80	-0.7
1,178,334	-		GFF4254	0.80	-1.0
1,178,436	+				+0.1
1,178,437	-				-0.4
1,178,437	-				-0.2
1,178,459	+				+0.4
1,178,509	-				+0.5
1,178,509	-				+0.7
1,178,509	-				-0.1
1,178,509	-				+0.3
1,178,614	-				-1.2
1,178,720	+				-0.7
1,178,721	-				-0.3
1,178,721	-				+1.8
1,178,753	+				+0.2
1,178,753	+				-1.2
1,178,753	+				-0.2
1,178,753	+				-0.4
1,178,754	-				+0.4
1,178,754	-				+0.1
1,178,754	-				+0.3
1,179,089	+		GFF4255	0.37	-0.8
1,179,089	+		GFF4255	0.37	+0.3
1,179,089	+		GFF4255	0.37	+0.5
1,179,089	+		GFF4255	0.37	-1.2
1,179,089	+		GFF4255	0.37	+1.0
1,179,090	-		GFF4255	0.37	+1.1
1,179,090	-		GFF4255	0.37	-1.7
1,179,090	-		GFF4255	0.37	-0.1
1,179,090	-		GFF4255	0.37	-1.8
1,179,090	-		GFF4255	0.37	+0.3
1,179,090	-		GFF4255	0.37	+0.2
1,179,305	+		GFF4255	0.63	-0.1
1,179,306	-		GFF4255	0.63	-0.2
1,179,306	-		GFF4255	0.63	+0.3
1,179,306	-		GFF4255	0.63	-0.5
1,179,306	-		GFF4255	0.63	+0.3
1,179,407	+		GFF4255	0.75	-0.2