Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF410 and GFF411 are separated by 156 nucleotides GFF411 and GFF412 are separated by 40 nucleotides GFF412 and GFF413 are separated by 34 nucleotides GFF413 and GFF414 are separated by 34 nucleotides
GFF410 - Transcriptional regulator SlmA, TetR family, at 78,885 to 79,586
GFF410
GFF411 - Predicted transcriptional regulator for fatty acid degradation FadP, TetR family, at 79,743 to 80,450
GFF411
GFF412 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 80,491 to 82,287
GFF412
GFF413 - FIG00581832: hypothetical protein, at 82,322 to 82,759
GFF413
GFF414 - Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 82,794 to 85,193
GFF414
Position (kb) 80
81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.602 kb on - strand at 79.602 kb on - strand at 79.615 kb on + strand at 79.616 kb on - strand at 79.675 kb on + strand at 79.676 kb on - strand at 79.676 kb on - strand at 79.690 kb on + strand at 79.691 kb on - strand at 79.981 kb on - strand, within GFF411 at 80.011 kb on - strand, within GFF411 at 80.109 kb on + strand, within GFF411 at 80.109 kb on + strand, within GFF411 at 80.109 kb on + strand, within GFF411 at 80.109 kb on + strand, within GFF411 at 80.110 kb on - strand, within GFF411 at 80.110 kb on - strand, within GFF411 at 80.110 kb on - strand, within GFF411 at 80.110 kb on - strand, within GFF411 at 80.301 kb on + strand, within GFF411 at 80.301 kb on + strand, within GFF411 at 80.301 kb on + strand, within GFF411 at 80.301 kb on + strand, within GFF411 at 80.301 kb on + strand, within GFF411 at 80.524 kb on + strand at 80.743 kb on + strand, within GFF412 at 80.743 kb on + strand, within GFF412 at 80.743 kb on + strand, within GFF412 at 80.743 kb on + strand, within GFF412 at 80.752 kb on + strand, within GFF412 at 80.752 kb on + strand, within GFF412 at 80.836 kb on + strand, within GFF412 at 80.876 kb on - strand, within GFF412 at 80.876 kb on - strand, within GFF412 at 80.876 kb on - strand, within GFF412 at 80.917 kb on + strand, within GFF412 at 80.918 kb on - strand, within GFF412 at 80.918 kb on - strand, within GFF412 at 80.944 kb on + strand, within GFF412 at 80.945 kb on - strand, within GFF412 at 81.062 kb on - strand, within GFF412 at 81.062 kb on - strand, within GFF412 at 81.244 kb on + strand, within GFF412 at 81.245 kb on - strand, within GFF412 at 81.427 kb on + strand, within GFF412 at 81.446 kb on - strand, within GFF412 at 81.712 kb on + strand, within GFF412 at 81.712 kb on + strand, within GFF412 at 81.757 kb on + strand, within GFF412 at 81.757 kb on + strand, within GFF412 at 81.757 kb on + strand, within GFF412 at 81.758 kb on - strand, within GFF412 at 81.758 kb on - strand, within GFF412 at 81.758 kb on - strand, within GFF412 at 81.784 kb on + strand, within GFF412 at 81.785 kb on - strand, within GFF412 at 81.814 kb on + strand, within GFF412 at 81.814 kb on + strand, within GFF412 at 81.815 kb on - strand, within GFF412 at 81.815 kb on - strand, within GFF412 at 81.815 kb on - strand, within GFF412 at 81.815 kb on - strand, within GFF412 at 82.063 kb on + strand, within GFF412 at 82.063 kb on + strand, within GFF412 at 82.064 kb on - strand, within GFF412 at 82.097 kb on - strand, within GFF412 at 82.162 kb on + strand at 82.163 kb on - strand at 82.163 kb on - strand at 82.192 kb on + strand at 82.192 kb on + strand at 82.192 kb on + strand at 82.285 kb on + strand at 82.469 kb on + strand, within GFF413 at 82.469 kb on + strand, within GFF413 at 82.617 kb on - strand, within GFF413 at 82.658 kb on + strand, within GFF413 at 83.023 kb on - strand at 83.023 kb on - strand at 83.023 kb on - strand at 83.106 kb on + strand, within GFF414 at 83.106 kb on + strand, within GFF414 at 83.157 kb on - strand, within GFF414 at 83.251 kb on - strand, within GFF414
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 79,602 - +0.3 79,602 - -1.1 79,615 + -0.3 79,616 - +0.6 79,675 + +0.1 79,676 - -0.3 79,676 - +0.0 79,690 + -1.4 79,691 - -0.4 79,981 - GFF411 0.34 +1.1 80,011 - GFF411 0.38 -2.0 80,109 + GFF411 0.52 -1.1 80,109 + GFF411 0.52 +0.7 80,109 + GFF411 0.52 -0.1 80,109 + GFF411 0.52 -0.9 80,110 - GFF411 0.52 +1.0 80,110 - GFF411 0.52 -1.4 80,110 - GFF411 0.52 -1.0 80,110 - GFF411 0.52 +0.0 80,301 + GFF411 0.79 -0.3 80,301 + GFF411 0.79 -0.5 80,301 + GFF411 0.79 +0.1 80,301 + GFF411 0.79 -0.9 80,301 + GFF411 0.79 -0.7 80,524 + -1.1 80,743 + GFF412 0.14 +0.3 80,743 + GFF412 0.14 +0.3 80,743 + GFF412 0.14 +0.3 80,743 + GFF412 0.14 +0.4 80,752 + GFF412 0.15 -0.0 80,752 + GFF412 0.15 +0.7 80,836 + GFF412 0.19 +0.7 80,876 - GFF412 0.21 +0.9 80,876 - GFF412 0.21 -0.7 80,876 - GFF412 0.21 -0.9 80,917 + GFF412 0.24 +0.4 80,918 - GFF412 0.24 -0.6 80,918 - GFF412 0.24 +0.3 80,944 + GFF412 0.25 +1.1 80,945 - GFF412 0.25 +2.7 81,062 - GFF412 0.32 +1.2 81,062 - GFF412 0.32 +0.8 81,244 + GFF412 0.42 +1.6 81,245 - GFF412 0.42 +0.4 81,427 + GFF412 0.52 +1.7 81,446 - GFF412 0.53 +0.4 81,712 + GFF412 0.68 +1.3 81,712 + GFF412 0.68 +1.2 81,757 + GFF412 0.70 +2.4 81,757 + GFF412 0.70 +0.5 81,757 + GFF412 0.70 +0.4 81,758 - GFF412 0.71 +0.3 81,758 - GFF412 0.71 +0.5 81,758 - GFF412 0.71 +1.0 81,784 + GFF412 0.72 +0.3 81,785 - GFF412 0.72 +0.0 81,814 + GFF412 0.74 +1.0 81,814 + GFF412 0.74 +0.3 81,815 - GFF412 0.74 +1.1 81,815 - GFF412 0.74 +1.6 81,815 - GFF412 0.74 +0.4 81,815 - GFF412 0.74 +0.1 82,063 + GFF412 0.87 +0.8 82,063 + GFF412 0.87 -1.2 82,064 - GFF412 0.88 +0.4 82,097 - GFF412 0.89 +1.2 82,162 + +1.4 82,163 - +0.6 82,163 - -1.0 82,192 + +0.1 82,192 + +1.7 82,192 + +0.3 82,285 + -0.2 82,469 + GFF413 0.34 +1.6 82,469 + GFF413 0.34 -0.3 82,617 - GFF413 0.67 -0.2 82,658 + GFF413 0.77 +1.2 83,023 - -0.3 83,023 - +1.3 83,023 - -0.1 83,106 + GFF414 0.13 +0.1 83,106 + GFF414 0.13 +0.8 83,157 - GFF414 0.15 -0.3 83,251 - GFF414 0.19 -0.2
Or see this region's nucleotide sequence