Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4012 and GFF4013 are separated by 113 nucleotides GFF4013 and GFF4014 are separated by 140 nucleotides GFF4014 and GFF4015 are separated by 215 nucleotides
GFF4012 - Two-component hybrid sensor and regulator, at 928,596 to 930,353
GFF4012
GFF4013 - hypothetical protein, at 930,467 to 930,775
GFF4013
GFF4014 - DUF1232 domain-containing protein, at 930,916 to 931,284
GFF4014
GFF4015 - hypothetical protein, at 931,500 to 932,348
GFF4015
Position (kb) 930
931
932 Strain fitness (log2 ratio) -2
-1
0
1
2 at 930.548 kb on + strand, within GFF4013 at 930.605 kb on + strand, within GFF4013 at 930.606 kb on - strand, within GFF4013 at 930.794 kb on + strand at 930.958 kb on + strand, within GFF4014 at 930.991 kb on + strand, within GFF4014 at 931.170 kb on + strand, within GFF4014 at 931.171 kb on - strand, within GFF4014 at 931.504 kb on - strand at 931.504 kb on - strand at 931.504 kb on - strand at 931.504 kb on - strand at 931.510 kb on + strand at 931.511 kb on - strand at 931.528 kb on - strand at 931.647 kb on + strand, within GFF4015 at 931.647 kb on + strand, within GFF4015 at 931.647 kb on + strand, within GFF4015 at 931.647 kb on + strand, within GFF4015 at 931.648 kb on - strand, within GFF4015 at 931.761 kb on + strand, within GFF4015 at 931.761 kb on + strand, within GFF4015 at 931.762 kb on - strand, within GFF4015 at 931.762 kb on - strand, within GFF4015 at 931.884 kb on + strand, within GFF4015 at 931.885 kb on - strand, within GFF4015 at 931.885 kb on - strand, within GFF4015 at 932.023 kb on - strand, within GFF4015 at 932.094 kb on + strand, within GFF4015 at 932.094 kb on + strand, within GFF4015 at 932.094 kb on + strand, within GFF4015 at 932.094 kb on + strand, within GFF4015
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 930,548 + GFF4013 0.26 -0.1 930,605 + GFF4013 0.45 -0.4 930,606 - GFF4013 0.45 +0.2 930,794 + -0.1 930,958 + GFF4014 0.11 +0.7 930,991 + GFF4014 0.20 -0.8 931,170 + GFF4014 0.69 -0.1 931,171 - GFF4014 0.69 +0.7 931,504 - -0.4 931,504 - -0.7 931,504 - -1.4 931,504 - +0.2 931,510 + +0.4 931,511 - -0.5 931,528 - -0.0 931,647 + GFF4015 0.17 -0.6 931,647 + GFF4015 0.17 +0.5 931,647 + GFF4015 0.17 +0.1 931,647 + GFF4015 0.17 -0.3 931,648 - GFF4015 0.17 +1.9 931,761 + GFF4015 0.31 -0.1 931,761 + GFF4015 0.31 +0.2 931,762 - GFF4015 0.31 -2.6 931,762 - GFF4015 0.31 +0.5 931,884 + GFF4015 0.45 +0.4 931,885 - GFF4015 0.45 -0.6 931,885 - GFF4015 0.45 +0.2 932,023 - GFF4015 0.62 +0.9 932,094 + GFF4015 0.70 +0.4 932,094 + GFF4015 0.70 +0.1 932,094 + GFF4015 0.70 -0.8 932,094 + GFF4015 0.70 -1.1
Or see this region's nucleotide sequence