Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3801 and GFF3802 are separated by 1 nucleotides GFF3802 and GFF3803 are separated by 1 nucleotides GFF3803 and GFF3804 are separated by 1 nucleotides GFF3804 and GFF3805 are separated by 4 nucleotides
GFF3801 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 700,804 to 701,229
GFF3801
GFF3802 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 701,231 to 702,097
GFF3802
GFF3803 - 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase, at 702,099 to 703,058
GFF3803
GFF3804 - Chromosome segregation ATPases-like protein, at 703,060 to 703,734
GFF3804
GFF3805 - Mll7338 protein, at 703,739 to 704,563
GFF3805
Position (kb) 702
703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 701.255 kb on + strand at 701.256 kb on - strand at 701.256 kb on - strand at 701.315 kb on + strand at 701.315 kb on + strand at 701.340 kb on - strand, within GFF3802 at 701.397 kb on - strand, within GFF3802 at 701.465 kb on + strand, within GFF3802 at 701.465 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.732 kb on + strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.733 kb on - strand, within GFF3802 at 701.771 kb on + strand, within GFF3802 at 701.771 kb on + strand, within GFF3802 at 701.772 kb on - strand, within GFF3802 at 701.930 kb on + strand, within GFF3802 at 701.930 kb on + strand, within GFF3802 at 701.931 kb on - strand, within GFF3802 at 702.041 kb on + strand at 702.041 kb on + strand at 702.041 kb on + strand at 702.042 kb on - strand at 702.042 kb on - strand at 702.098 kb on + strand at 702.099 kb on - strand at 702.099 kb on - strand at 702.099 kb on - strand at 702.244 kb on - strand, within GFF3803 at 702.498 kb on + strand, within GFF3803 at 702.499 kb on - strand, within GFF3803 at 702.499 kb on - strand, within GFF3803 at 702.558 kb on + strand, within GFF3803 at 702.559 kb on - strand, within GFF3803 at 702.819 kb on + strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.820 kb on - strand, within GFF3803 at 702.849 kb on + strand, within GFF3803 at 702.849 kb on + strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.850 kb on - strand, within GFF3803 at 702.862 kb on - strand, within GFF3803 at 703.014 kb on + strand at 703.105 kb on + strand at 703.105 kb on + strand at 703.105 kb on + strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.106 kb on - strand at 703.199 kb on - strand, within GFF3804 at 703.255 kb on + strand, within GFF3804 at 703.381 kb on + strand, within GFF3804 at 703.382 kb on - strand, within GFF3804 at 703.441 kb on + strand, within GFF3804 at 703.624 kb on + strand, within GFF3804 at 703.625 kb on - strand, within GFF3804 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.833 kb on + strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.834 kb on - strand, within GFF3805 at 703.869 kb on + strand, within GFF3805 at 703.870 kb on - strand, within GFF3805 at 703.870 kb on - strand, within GFF3805 at 703.894 kb on - strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.920 kb on + strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.921 kb on - strand, within GFF3805 at 703.950 kb on + strand, within GFF3805
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 701,255 + -1.3 701,256 - -0.5 701,256 - -0.2 701,315 + -1.9 701,315 + -1.6 701,340 - GFF3802 0.13 -0.8 701,397 - GFF3802 0.19 -0.9 701,465 + GFF3802 0.27 -0.6 701,465 + GFF3802 0.27 -1.0 701,732 + GFF3802 0.58 +0.9 701,732 + GFF3802 0.58 +0.1 701,732 + GFF3802 0.58 +1.2 701,733 - GFF3802 0.58 -1.2 701,733 - GFF3802 0.58 -0.1 701,733 - GFF3802 0.58 +0.5 701,733 - GFF3802 0.58 -2.3 701,733 - GFF3802 0.58 -0.5 701,733 - GFF3802 0.58 -1.0 701,771 + GFF3802 0.62 -0.5 701,771 + GFF3802 0.62 -0.6 701,772 - GFF3802 0.62 +0.6 701,930 + GFF3802 0.81 -1.7 701,930 + GFF3802 0.81 -1.2 701,931 - GFF3802 0.81 -1.2 702,041 + -1.7 702,041 + -1.8 702,041 + -0.5 702,042 - -0.2 702,042 - -1.1 702,098 + -0.5 702,099 - -3.0 702,099 - -2.5 702,099 - -1.8 702,244 - GFF3803 0.15 -1.4 702,498 + GFF3803 0.42 -2.4 702,499 - GFF3803 0.42 -0.7 702,499 - GFF3803 0.42 -1.7 702,558 + GFF3803 0.48 -1.7 702,559 - GFF3803 0.48 -0.8 702,819 + GFF3803 0.75 -2.1 702,820 - GFF3803 0.75 -2.1 702,820 - GFF3803 0.75 +0.6 702,820 - GFF3803 0.75 -1.5 702,820 - GFF3803 0.75 -2.6 702,849 + GFF3803 0.78 -1.7 702,849 + GFF3803 0.78 -1.4 702,850 - GFF3803 0.78 +0.2 702,850 - GFF3803 0.78 -1.6 702,850 - GFF3803 0.78 +0.8 702,850 - GFF3803 0.78 -1.2 702,862 - GFF3803 0.79 -0.1 703,014 + -1.5 703,105 + -0.0 703,105 + +0.7 703,105 + -0.7 703,106 - -0.4 703,106 - +0.3 703,106 - -0.6 703,106 - -0.1 703,106 - -1.0 703,106 - -0.5 703,106 - +1.8 703,199 - GFF3804 0.21 -0.8 703,255 + GFF3804 0.29 +0.6 703,381 + GFF3804 0.48 +0.1 703,382 - GFF3804 0.48 +0.6 703,441 + GFF3804 0.56 +0.3 703,624 + GFF3804 0.84 +0.3 703,625 - GFF3804 0.84 +0.0 703,833 + GFF3805 0.11 +0.3 703,833 + GFF3805 0.11 -0.2 703,833 + GFF3805 0.11 +0.2 703,833 + GFF3805 0.11 -0.1 703,833 + GFF3805 0.11 -0.1 703,833 + GFF3805 0.11 +1.2 703,833 + GFF3805 0.11 -0.7 703,833 + GFF3805 0.11 -0.1 703,833 + GFF3805 0.11 -0.7 703,834 - GFF3805 0.12 -1.5 703,834 - GFF3805 0.12 -0.6 703,834 - GFF3805 0.12 +0.5 703,834 - GFF3805 0.12 +1.2 703,834 - GFF3805 0.12 +0.6 703,834 - GFF3805 0.12 -0.3 703,834 - GFF3805 0.12 -0.4 703,834 - GFF3805 0.12 -2.4 703,834 - GFF3805 0.12 -0.4 703,869 + GFF3805 0.16 +0.4 703,870 - GFF3805 0.16 +0.2 703,870 - GFF3805 0.16 +0.2 703,894 - GFF3805 0.19 -0.2 703,920 + GFF3805 0.22 +0.2 703,920 + GFF3805 0.22 -0.1 703,920 + GFF3805 0.22 +0.8 703,921 - GFF3805 0.22 -0.6 703,921 - GFF3805 0.22 +0.6 703,921 - GFF3805 0.22 +0.2 703,950 + GFF3805 0.26 +0.1
Or see this region's nucleotide sequence