Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3795 and GFF3796 overlap by 4 nucleotides GFF3796 and GFF3797 are separated by 129 nucleotides GFF3797 and GFF3798 are separated by 34 nucleotides
GFF3795 - Auxin Efflux Carrier, at 695,401 to 696,372
GFF3795
GFF3796 - Transcriptional regulator ligR, LysR family, at 696,369 to 697,265
GFF3796
GFF3797 - Hypothetical ABC transport system, periplasmic component, at 697,395 to 698,096
GFF3797
GFF3798 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 698,131 to 699,165
GFF3798
Position (kb) 696
697
698 Strain fitness (log2 ratio) -2
-1
0
1 at 695.434 kb on + strand at 695.434 kb on + strand at 695.434 kb on + strand at 695.435 kb on - strand at 695.435 kb on - strand at 695.435 kb on - strand at 695.435 kb on - strand at 695.593 kb on + strand, within GFF3795 at 695.593 kb on + strand, within GFF3795 at 695.594 kb on - strand, within GFF3795 at 695.689 kb on + strand, within GFF3795 at 695.689 kb on + strand, within GFF3795 at 695.690 kb on - strand, within GFF3795 at 695.690 kb on - strand, within GFF3795 at 695.690 kb on - strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 696.370 kb on + strand at 696.370 kb on + strand at 696.497 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 697.243 kb on + strand at 697.243 kb on + strand at 697.243 kb on + strand at 697.244 kb on - strand at 697.244 kb on - strand at 697.294 kb on + strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.298 kb on + strand at 697.298 kb on + strand at 697.750 kb on - strand, within GFF3797 at 698.161 kb on + strand at 698.161 kb on + strand at 698.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 695,434 + +1.2 695,434 + -0.6 695,434 + +1.1 695,435 - -0.6 695,435 - +0.2 695,435 - +1.0 695,435 - +1.1 695,593 + GFF3795 0.20 +0.7 695,593 + GFF3795 0.20 -1.3 695,594 - GFF3795 0.20 -0.3 695,689 + GFF3795 0.30 -0.3 695,689 + GFF3795 0.30 -0.2 695,690 - GFF3795 0.30 +0.1 695,690 - GFF3795 0.30 -0.2 695,690 - GFF3795 0.30 +0.6 695,725 + GFF3795 0.33 -0.6 695,725 + GFF3795 0.33 -1.1 695,725 + GFF3795 0.33 -1.8 695,725 + GFF3795 0.33 +0.1 695,725 + GFF3795 0.33 +0.3 695,725 + GFF3795 0.33 +0.2 695,725 + GFF3795 0.33 +0.3 695,726 - GFF3795 0.33 -1.0 695,726 - GFF3795 0.33 +0.1 695,726 - GFF3795 0.33 +0.5 695,726 - GFF3795 0.33 -0.0 696,370 + -0.6 696,370 + -0.7 696,497 - GFF3796 0.14 -1.0 696,827 - GFF3796 0.51 -1.0 696,827 - GFF3796 0.51 -1.1 696,827 - GFF3796 0.51 -0.8 696,827 - GFF3796 0.51 +0.2 696,827 - GFF3796 0.51 -0.9 697,243 + -0.2 697,243 + +0.4 697,243 + -1.1 697,244 - +0.3 697,244 - +0.3 697,294 + -0.6 697,295 - -0.7 697,295 - +0.1 697,295 - -1.1 697,295 - -0.8 697,295 - -0.1 697,298 + -0.3 697,298 + +0.3 697,750 - GFF3797 0.51 -1.0 698,161 + -1.3 698,161 + -0.1 698,162 - -1.2
Or see this region's nucleotide sequence