Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3717

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3716 and GFF3717 are separated by 29 nucleotidesGFF3717 and GFF3718 are separated by 92 nucleotides GFF3716 - Tricarboxylate transport protein TctC, at 609,322 to 610,305 GFF3716 GFF3717 - Salicylate hydroxylase (EC 1.14.13.1), at 610,335 to 611,474 GFF3717 GFF3718 - Transcriptional regulator, AraC family, at 611,567 to 612,556 GFF3718 Position (kb) 610 611 612Strain fitness (log2 ratio) -2 -1 0 1at 609.539 kb on + strand, within GFF3716at 609.744 kb on - strand, within GFF3716at 610.375 kb on + strandat 610.376 kb on - strandat 610.720 kb on + strand, within GFF3717at 611.183 kb on - strand, within GFF3717at 612.339 kb on - strand, within GFF3718

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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609,539 + GFF3716 0.22 +0.5
609,744 - GFF3716 0.43 +0.8
610,375 + +0.3
610,376 - +0.6
610,720 + GFF3717 0.34 -0.6
611,183 - GFF3717 0.74 -1.8
612,339 - GFF3718 0.78 -1.1

Or see this region's nucleotide sequence