Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3511

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3510 and GFF3511 are separated by 252 nucleotidesGFF3511 and GFF3512 are separated by 5 nucleotidesGFF3512 and GFF3513 are separated by 52 nucleotides GFF3510 - FIG01198748: hypothetical protein, at 396,526 to 398,232 GFF3510 GFF3511 - Lactoylglutathione lyase (EC 4.4.1.5), at 398,485 to 398,931 GFF3511 GFF3512 - uncharacterized domain 1, at 398,937 to 399,479 GFF3512 GFF3513 - Transcriptional regulator, MarR family, at 399,532 to 399,996 GFF3513 Position (kb) 398 399Strain fitness (log2 ratio) -2 -1 0 1 2at 397.579 kb on + strand, within GFF3510at 397.579 kb on + strand, within GFF3510at 397.599 kb on + strand, within GFF3510at 397.599 kb on + strand, within GFF3510at 397.600 kb on - strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.632 kb on + strand, within GFF3510at 397.632 kb on + strand, within GFF3510at 397.632 kb on + strand, within GFF3510at 397.633 kb on - strand, within GFF3510at 397.661 kb on + strand, within GFF3510at 397.661 kb on + strand, within GFF3510at 397.662 kb on - strand, within GFF3510at 397.662 kb on - strand, within GFF3510at 397.765 kb on + strand, within GFF3510at 397.765 kb on + strand, within GFF3510at 397.766 kb on - strand, within GFF3510at 397.766 kb on - strand, within GFF3510at 397.766 kb on - strand, within GFF3510at 397.766 kb on - strand, within GFF3510at 397.767 kb on + strand, within GFF3510at 397.767 kb on + strand, within GFF3510at 397.767 kb on + strand, within GFF3510at 397.767 kb on - strand, within GFF3510at 397.785 kb on - strand, within GFF3510at 398.167 kb on + strandat 398.270 kb on + strandat 398.271 kb on - strandat 398.271 kb on - strandat 398.271 kb on - strandat 398.323 kb on + strandat 398.324 kb on - strandat 398.344 kb on + strandat 398.345 kb on - strandat 398.487 kb on - strandat 398.541 kb on - strand, within GFF3511at 398.684 kb on + strand, within GFF3511at 398.684 kb on + strand, within GFF3511at 398.684 kb on + strand, within GFF3511at 398.685 kb on - strand, within GFF3511at 398.717 kb on + strand, within GFF3511at 398.717 kb on + strand, within GFF3511at 398.735 kb on + strand, within GFF3511at 398.735 kb on + strand, within GFF3511at 398.735 kb on + strand, within GFF3511at 398.736 kb on - strand, within GFF3511at 398.756 kb on + strand, within GFF3511at 398.756 kb on + strand, within GFF3511at 398.756 kb on + strand, within GFF3511at 398.756 kb on + strand, within GFF3511at 398.756 kb on + strand, within GFF3511at 398.757 kb on - strand, within GFF3511at 398.757 kb on - strand, within GFF3511at 398.795 kb on + strand, within GFF3511at 398.816 kb on + strand, within GFF3511at 398.816 kb on + strand, within GFF3511at 398.816 kb on + strand, within GFF3511at 398.817 kb on - strand, within GFF3511at 398.822 kb on + strand, within GFF3511at 398.822 kb on + strand, within GFF3511at 398.822 kb on + strand, within GFF3511at 398.823 kb on - strand, within GFF3511at 398.873 kb on + strand, within GFF3511at 398.920 kb on + strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.938 kb on + strandat 398.986 kb on + strandat 398.986 kb on + strandat 398.986 kb on + strandat 399.085 kb on + strand, within GFF3512at 399.085 kb on + strand, within GFF3512at 399.086 kb on - strand, within GFF3512at 399.086 kb on - strand, within GFF3512at 399.086 kb on - strand, within GFF3512at 399.130 kb on + strand, within GFF3512at 399.130 kb on + strand, within GFF3512at 399.131 kb on - strand, within GFF3512at 399.197 kb on - strand, within GFF3512at 399.230 kb on - strand, within GFF3512at 399.230 kb on - strand, within GFF3512at 399.439 kb on + strandat 399.439 kb on + strandat 399.439 kb on + strandat 399.440 kb on - strandat 399.440 kb on - strandat 399.622 kb on + strand, within GFF3513at 399.623 kb on - strand, within GFF3513at 399.623 kb on - strand, within GFF3513at 399.665 kb on - strand, within GFF3513at 399.665 kb on - strand, within GFF3513at 399.665 kb on - strand, within GFF3513

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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397,579 + GFF3510 0.62 -0.9
397,579 + GFF3510 0.62 -0.2
397,599 + GFF3510 0.63 -0.1
397,599 + GFF3510 0.63 +0.4
397,600 - GFF3510 0.63 +0.9
397,630 + GFF3510 0.65 -0.1
397,630 + GFF3510 0.65 +0.2
397,630 + GFF3510 0.65 +0.9
397,630 + GFF3510 0.65 +1.4
397,630 + GFF3510 0.65 -0.9
397,630 + GFF3510 0.65 -0.2
397,630 + GFF3510 0.65 -1.1
397,630 + GFF3510 0.65 +1.0
397,630 + GFF3510 0.65 -1.6
397,630 + GFF3510 0.65 -0.4
397,631 - GFF3510 0.65 +0.1
397,631 - GFF3510 0.65 +0.1
397,631 - GFF3510 0.65 -0.9
397,631 - GFF3510 0.65 +0.1
397,631 - GFF3510 0.65 +2.0
397,631 - GFF3510 0.65 +0.4
397,631 - GFF3510 0.65 -0.3
397,631 - GFF3510 0.65 +0.4
397,632 + GFF3510 0.65 -0.5
397,632 + GFF3510 0.65 +0.9
397,632 + GFF3510 0.65 -0.9
397,633 - GFF3510 0.65 -0.3
397,661 + GFF3510 0.66 -0.1
397,661 + GFF3510 0.66 -0.6
397,662 - GFF3510 0.67 +0.3
397,662 - GFF3510 0.67 +1.4
397,765 + GFF3510 0.73 +0.5
397,765 + GFF3510 0.73 -0.3
397,766 - GFF3510 0.73 +0.3
397,766 - GFF3510 0.73 +0.4
397,766 - GFF3510 0.73 +0.3
397,766 - GFF3510 0.73 -1.3
397,767 + GFF3510 0.73 +0.2
397,767 + GFF3510 0.73 -0.0
397,767 + GFF3510 0.73 +0.0
397,767 - GFF3510 0.73 +0.9
397,785 - GFF3510 0.74 -0.4
398,167 + -0.4
398,270 + -0.8
398,271 - +0.8
398,271 - -0.7
398,271 - -0.7
398,323 + -0.7
398,324 - -0.6
398,344 + +0.0
398,345 - -0.1
398,487 - +0.2
398,541 - GFF3511 0.13 +0.4
398,684 + GFF3511 0.45 -0.1
398,684 + GFF3511 0.45 +0.1
398,684 + GFF3511 0.45 +1.4
398,685 - GFF3511 0.45 -0.1
398,717 + GFF3511 0.52 -2.0
398,717 + GFF3511 0.52 +0.3
398,735 + GFF3511 0.56 +0.5
398,735 + GFF3511 0.56 -0.6
398,735 + GFF3511 0.56 +0.2
398,736 - GFF3511 0.56 -0.9
398,756 + GFF3511 0.61 +0.6
398,756 + GFF3511 0.61 -0.1
398,756 + GFF3511 0.61 -0.6
398,756 + GFF3511 0.61 +0.7
398,756 + GFF3511 0.61 -0.5
398,757 - GFF3511 0.61 +1.2
398,757 - GFF3511 0.61 -0.3
398,795 + GFF3511 0.69 -0.1
398,816 + GFF3511 0.74 +0.5
398,816 + GFF3511 0.74 +0.8
398,816 + GFF3511 0.74 -0.0
398,817 - GFF3511 0.74 +1.6
398,822 + GFF3511 0.75 +1.9
398,822 + GFF3511 0.75 -1.3
398,822 + GFF3511 0.75 -0.4
398,823 - GFF3511 0.76 +0.3
398,873 + GFF3511 0.87 +0.0
398,920 + +1.1
398,921 - -1.9
398,921 - -0.5
398,921 - -0.2
398,921 - +0.1
398,921 - +0.6
398,921 - -0.3
398,921 - -0.5
398,938 + -0.5
398,986 + -0.7
398,986 + +0.4
398,986 + +0.1
399,085 + GFF3512 0.27 -2.1
399,085 + GFF3512 0.27 +0.4
399,086 - GFF3512 0.27 +1.5
399,086 - GFF3512 0.27 -0.9
399,086 - GFF3512 0.27 +0.1
399,130 + GFF3512 0.36 -1.0
399,130 + GFF3512 0.36 -0.1
399,131 - GFF3512 0.36 +1.2
399,197 - GFF3512 0.48 -0.4
399,230 - GFF3512 0.54 +0.4
399,230 - GFF3512 0.54 +0.1
399,439 + -0.5
399,439 + +0.4
399,439 + +0.1
399,440 - +0.9
399,440 - +0.0
399,622 + GFF3513 0.19 -0.2
399,623 - GFF3513 0.20 +0.4
399,623 - GFF3513 0.20 -0.2
399,665 - GFF3513 0.29 +0.1
399,665 - GFF3513 0.29 +2.1
399,665 - GFF3513 0.29 -1.4

Or see this region's nucleotide sequence