Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3506 and GFF3507 overlap by 14 nucleotides GFF3507 and GFF3508 are separated by 256 nucleotides
GFF3506 - FIG00464231: hypothetical protein, at 386,132 to 389,641
GFF3506
GFF3507 - VrlR-like protein, at 389,628 to 390,404
GFF3507
GFF3508 - SMART domain SM00020; serine protease-like, at 390,661 to 395,013
GFF3508
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2 at 388.740 kb on - strand, within GFF3506 at 388.766 kb on + strand, within GFF3506 at 388.766 kb on + strand, within GFF3506 at 388.766 kb on + strand, within GFF3506 at 388.766 kb on + strand, within GFF3506 at 388.767 kb on - strand, within GFF3506 at 388.767 kb on - strand, within GFF3506 at 388.767 kb on - strand, within GFF3506 at 388.767 kb on - strand, within GFF3506 at 388.916 kb on + strand, within GFF3506 at 388.917 kb on - strand, within GFF3506 at 389.066 kb on - strand, within GFF3506 at 389.233 kb on + strand, within GFF3506 at 389.301 kb on + strand at 389.460 kb on - strand at 389.570 kb on + strand at 389.570 kb on + strand at 389.570 kb on + strand at 389.571 kb on - strand at 389.571 kb on - strand at 389.571 kb on - strand at 389.571 kb on - strand at 389.571 kb on - strand at 389.659 kb on + strand at 389.659 kb on + strand at 389.660 kb on - strand at 389.711 kb on - strand, within GFF3507 at 389.726 kb on + strand, within GFF3507 at 389.727 kb on - strand, within GFF3507 at 390.226 kb on + strand, within GFF3507 at 390.241 kb on - strand, within GFF3507 at 390.271 kb on + strand, within GFF3507 at 390.337 kb on + strand at 390.337 kb on + strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.338 kb on - strand at 390.346 kb on + strand at 390.346 kb on + strand at 390.347 kb on - strand at 390.394 kb on + strand at 390.394 kb on + strand at 390.394 kb on + strand at 390.395 kb on - strand at 390.395 kb on - strand at 390.397 kb on - strand at 390.418 kb on + strand at 390.419 kb on - strand at 390.518 kb on + strand at 390.518 kb on + strand at 390.518 kb on + strand at 390.519 kb on - strand at 390.555 kb on - strand at 390.581 kb on + strand at 390.581 kb on + strand at 390.582 kb on - strand at 390.582 kb on - strand at 390.582 kb on - strand at 390.703 kb on + strand at 390.710 kb on - strand at 390.766 kb on + strand at 390.767 kb on - strand at 390.793 kb on - strand at 390.990 kb on + strand at 390.990 kb on + strand at 390.990 kb on + strand at 390.990 kb on + strand at 390.990 kb on + strand at 390.991 kb on - strand at 390.991 kb on - strand at 390.991 kb on - strand at 390.991 kb on - strand at 391.000 kb on + strand at 391.000 kb on + strand at 391.001 kb on - strand at 391.121 kb on + strand, within GFF3508 at 391.122 kb on - strand, within GFF3508 at 391.122 kb on - strand, within GFF3508 at 391.122 kb on - strand, within GFF3508 at 391.173 kb on + strand, within GFF3508 at 391.173 kb on + strand, within GFF3508 at 391.174 kb on - strand, within GFF3508 at 391.174 kb on - strand, within GFF3508 at 391.267 kb on - strand, within GFF3508 at 391.400 kb on - strand, within GFF3508
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 388,740 - GFF3506 0.74 +1.0 388,766 + GFF3506 0.75 -0.6 388,766 + GFF3506 0.75 -0.6 388,766 + GFF3506 0.75 +0.8 388,766 + GFF3506 0.75 +0.3 388,767 - GFF3506 0.75 +0.7 388,767 - GFF3506 0.75 -1.1 388,767 - GFF3506 0.75 +0.5 388,767 - GFF3506 0.75 +0.6 388,916 + GFF3506 0.79 +0.2 388,917 - GFF3506 0.79 -0.4 389,066 - GFF3506 0.84 -0.1 389,233 + GFF3506 0.88 +1.9 389,301 + -0.1 389,460 - -0.3 389,570 + +1.7 389,570 + -1.9 389,570 + +1.4 389,571 - -0.3 389,571 - -0.3 389,571 - +0.1 389,571 - +0.1 389,571 - -0.3 389,659 + +0.4 389,659 + -0.5 389,660 - -0.9 389,711 - GFF3507 0.11 -1.1 389,726 + GFF3507 0.13 +1.2 389,727 - GFF3507 0.13 -0.2 390,226 + GFF3507 0.77 -0.6 390,241 - GFF3507 0.79 -0.3 390,271 + GFF3507 0.83 -1.4 390,337 + -0.0 390,337 + -0.3 390,338 - -0.7 390,338 - -0.6 390,338 - +0.1 390,338 - -0.7 390,338 - +0.4 390,346 + +0.0 390,346 + -0.4 390,347 - -1.7 390,394 + -0.9 390,394 + -1.7 390,394 + -0.1 390,395 - -0.2 390,395 - -0.6 390,397 - +0.3 390,418 + +0.7 390,419 - +0.2 390,518 + -0.3 390,518 + -0.4 390,518 + -0.6 390,519 - -0.7 390,555 - +0.7 390,581 + -0.4 390,581 + -0.2 390,582 - -0.1 390,582 - -0.7 390,582 - +0.7 390,703 + +0.4 390,710 - +1.6 390,766 + +0.2 390,767 - +0.4 390,793 - -0.4 390,990 + -0.3 390,990 + -0.3 390,990 + -0.4 390,990 + +0.3 390,990 + +0.2 390,991 - -1.4 390,991 - -0.2 390,991 - -1.6 390,991 - -0.4 391,000 + -0.6 391,000 + -0.3 391,001 - -0.9 391,121 + GFF3508 0.11 -0.8 391,122 - GFF3508 0.11 -0.4 391,122 - GFF3508 0.11 +0.1 391,122 - GFF3508 0.11 +0.3 391,173 + GFF3508 0.12 +0.6 391,173 + GFF3508 0.12 -0.8 391,174 - GFF3508 0.12 -0.5 391,174 - GFF3508 0.12 -0.2 391,267 - GFF3508 0.14 -0.3 391,400 - GFF3508 0.17 -0.0
Or see this region's nucleotide sequence