Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3486

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
366,607	+		GFF3485	0.32	+1.2
366,655	+		GFF3485	0.38	-0.0
366,655	+		GFF3485	0.38	-0.8
366,655	+		GFF3485	0.38	+0.2
366,670	-		GFF3485	0.39	+0.1
367,252	-		GFF3486	0.12	-0.0
367,317	+		GFF3486	0.33	+1.0
367,317	+		GFF3486	0.33	-0.3
367,317	+		GFF3486	0.33	-0.1
367,404	+		GFF3486	0.61	-0.1
367,431	+		GFF3486	0.70	-0.8
367,431	+		GFF3486	0.70	+0.3
367,432	-		GFF3486	0.71	-0.9
367,684	-		GFF3487	0.12	-0.8
367,892	-		GFF3487	0.45	-0.0
368,326	-				-0.1
368,371	-				+1.6
368,489	+		GFF3488	0.50	+0.1