Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3457 and GFF3458 are separated by 45 nucleotides GFF3458 and GFF3459 overlap by 89 nucleotides GFF3459 and GFF3460 overlap by 4 nucleotides
GFF3457 - Transcriptional regulator, LysR family, at 337,956 to 338,888
GFF3457
GFF3458 - Electron transfer flavoprotein, alpha subunit, at 338,934 to 339,878
GFF3458
GFF3459 - hypothetical protein, at 339,790 to 339,912
GFF3459
GFF3460 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 339,909 to 341,573
GFF3460
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1 at 338.244 kb on - strand, within GFF3457 at 338.397 kb on - strand, within GFF3457 at 338.467 kb on + strand, within GFF3457 at 338.516 kb on - strand, within GFF3457 at 338.523 kb on + strand, within GFF3457 at 338.523 kb on + strand, within GFF3457 at 338.936 kb on - strand at 338.936 kb on - strand at 339.335 kb on - strand, within GFF3458 at 339.481 kb on + strand, within GFF3458 at 339.482 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.769 kb on - strand, within GFF3458 at 339.791 kb on + strand at 339.792 kb on - strand at 339.891 kb on + strand, within GFF3459 at 339.927 kb on - strand at 340.060 kb on + strand at 340.060 kb on + strand at 340.238 kb on - strand, within GFF3460 at 340.667 kb on - strand, within GFF3460
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 338,244 - GFF3457 0.31 +0.8 338,397 - GFF3457 0.47 -0.1 338,467 + GFF3457 0.55 -0.3 338,516 - GFF3457 0.60 -1.0 338,523 + GFF3457 0.61 +0.5 338,523 + GFF3457 0.61 +0.5 338,936 - -2.2 338,936 - -0.6 339,335 - GFF3458 0.42 -0.3 339,481 + GFF3458 0.58 -1.5 339,482 - GFF3458 0.58 -0.5 339,769 - GFF3458 0.88 -0.5 339,769 - GFF3458 0.88 -0.0 339,769 - GFF3458 0.88 +0.3 339,769 - GFF3458 0.88 -0.5 339,769 - GFF3458 0.88 -2.3 339,791 + -0.4 339,792 - +1.0 339,891 + GFF3459 0.82 -0.8 339,927 - -0.2 340,060 + +0.5 340,060 + +0.4 340,238 - GFF3460 0.20 -0.5 340,667 - GFF3460 0.46 +0.4
Or see this region's nucleotide sequence