Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3365

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3364 and GFF3365 are separated by 157 nucleotidesGFF3365 and GFF3366 overlap by 4 nucleotidesGFF3366 and GFF3367 are separated by 18 nucleotides GFF3364 - Transcriptional regulator, at 249,240 to 250,166 GFF3364 GFF3365 - Citrate synthase (si) (EC 2.3.3.1), at 250,324 to 251,634 GFF3365 GFF3366 - YgfY COG2938, at 251,631 to 251,942 GFF3366 GFF3367 - Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1), at 251,961 to 252,665 GFF3367 Position (kb) 250 251 252Strain fitness (log2 ratio) -1 0 1at 249.884 kb on - strand, within GFF3364at 249.884 kb on - strand, within GFF3364

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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249,884 - GFF3364 0.69 -0.6
249,884 - GFF3364 0.69 -1.7

Or see this region's nucleotide sequence