Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3355 and GFF3356 are separated by 43 nucleotides GFF3356 and GFF3357 overlap by 4 nucleotides GFF3357 and GFF3358 are separated by 71 nucleotides
GFF3355 - Tryptophan synthase beta chain (EC 4.2.1.20), at 238,822 to 240,093
GFF3355
GFF3356 - Phosphoribosylanthranilate isomerase (EC 5.3.1.24), at 240,137 to 240,817
GFF3356
GFF3357 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 240,814 to 241,581
GFF3357
GFF3358 - Translation initiation factor 2, at 241,653 to 244,334
GFF3358
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 240.044 kb on + strand at 240.044 kb on + strand at 240.080 kb on + strand at 240.081 kb on - strand at 240.335 kb on + strand, within GFF3356 at 240.335 kb on + strand, within GFF3356 at 240.335 kb on + strand, within GFF3356 at 240.335 kb on + strand, within GFF3356 at 240.393 kb on + strand, within GFF3356 at 240.393 kb on + strand, within GFF3356 at 240.394 kb on - strand, within GFF3356 at 240.451 kb on - strand, within GFF3356 at 240.456 kb on - strand, within GFF3356 at 240.456 kb on - strand, within GFF3356 at 240.712 kb on - strand, within GFF3356 at 240.712 kb on - strand, within GFF3356 at 240.712 kb on - strand, within GFF3356 at 240.712 kb on - strand, within GFF3356 at 240.869 kb on + strand at 240.869 kb on + strand at 240.869 kb on + strand at 240.869 kb on + strand at 240.869 kb on + strand at 240.887 kb on + strand at 240.888 kb on - strand at 241.058 kb on + strand, within GFF3357 at 241.059 kb on - strand, within GFF3357 at 241.059 kb on - strand, within GFF3357 at 241.059 kb on - strand, within GFF3357 at 241.265 kb on + strand, within GFF3357 at 241.266 kb on - strand, within GFF3357 at 241.266 kb on - strand, within GFF3357 at 241.266 kb on - strand, within GFF3357 at 241.266 kb on - strand, within GFF3357 at 241.266 kb on - strand, within GFF3357 at 241.559 kb on + strand at 241.574 kb on + strand at 241.574 kb on + strand at 241.575 kb on - strand at 241.575 kb on - strand at 242.396 kb on - strand, within GFF3358 at 242.476 kb on + strand, within GFF3358 at 242.477 kb on - strand, within GFF3358 at 242.477 kb on - strand, within GFF3358 at 242.528 kb on - strand, within GFF3358 at 242.528 kb on - strand, within GFF3358
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 240,044 + -1.3 240,044 + -1.8 240,080 + -0.9 240,081 - -1.6 240,335 + GFF3356 0.29 -1.3 240,335 + GFF3356 0.29 -0.9 240,335 + GFF3356 0.29 -1.6 240,335 + GFF3356 0.29 -1.3 240,393 + GFF3356 0.38 -0.6 240,393 + GFF3356 0.38 -1.8 240,394 - GFF3356 0.38 -2.8 240,451 - GFF3356 0.46 -0.8 240,456 - GFF3356 0.47 -0.9 240,456 - GFF3356 0.47 +0.7 240,712 - GFF3356 0.84 -0.6 240,712 - GFF3356 0.84 +0.1 240,712 - GFF3356 0.84 +0.2 240,712 - GFF3356 0.84 +0.7 240,869 + +2.2 240,869 + +1.1 240,869 + +1.2 240,869 + +1.6 240,869 + -0.2 240,887 + +1.7 240,888 - +3.1 241,058 + GFF3357 0.32 +1.3 241,059 - GFF3357 0.32 +1.9 241,059 - GFF3357 0.32 +0.2 241,059 - GFF3357 0.32 +0.3 241,265 + GFF3357 0.59 +0.0 241,266 - GFF3357 0.59 +2.7 241,266 - GFF3357 0.59 +0.3 241,266 - GFF3357 0.59 +1.1 241,266 - GFF3357 0.59 +1.5 241,266 - GFF3357 0.59 +1.4 241,559 + +1.2 241,574 + +1.1 241,574 + +2.1 241,575 - +1.0 241,575 - +1.3 242,396 - GFF3358 0.28 +0.1 242,476 + GFF3358 0.31 +3.7 242,477 - GFF3358 0.31 +0.8 242,477 - GFF3358 0.31 +0.7 242,528 - GFF3358 0.33 +3.2 242,528 - GFF3358 0.33 -1.3
Or see this region's nucleotide sequence