Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF330 and GFF331 are separated by 48 nucleotides GFF331 and GFF332 are separated by 161 nucleotides GFF332 and GFF333 are separated by 81 nucleotides
GFF330 - Orf21; putative lipoprotein, at 350,793 to 351,182
GFF330
GFF331 - hypothetical protein, at 351,231 to 351,662
GFF331
GFF332 - Putative membrane protein YeiH, at 351,824 to 352,930
GFF332
GFF333 - LysR family transcriptional regulator YeiE, at 353,012 to 353,977
GFF333
Position (kb) 351
352
353 Strain fitness (log2 ratio) -2
-1
0
1 at 350.873 kb on - strand, within GFF330 at 350.890 kb on + strand, within GFF330 at 350.932 kb on + strand, within GFF330 at 350.933 kb on - strand, within GFF330 at 350.933 kb on - strand, within GFF330 at 351.043 kb on + strand, within GFF330 at 351.195 kb on + strand at 351.213 kb on - strand at 351.313 kb on + strand, within GFF331 at 351.475 kb on + strand, within GFF331 at 351.476 kb on - strand, within GFF331 at 351.476 kb on - strand, within GFF331 at 351.527 kb on - strand, within GFF331 at 351.766 kb on + strand at 352.296 kb on + strand, within GFF332 at 352.296 kb on + strand, within GFF332 at 352.296 kb on + strand, within GFF332 at 352.366 kb on - strand, within GFF332 at 352.574 kb on + strand, within GFF332 at 352.574 kb on + strand, within GFF332 at 352.574 kb on + strand, within GFF332 at 352.601 kb on + strand, within GFF332 at 352.601 kb on + strand, within GFF332 at 352.602 kb on - strand, within GFF332 at 352.979 kb on + strand at 352.980 kb on - strand at 352.980 kb on - strand at 352.980 kb on - strand at 353.002 kb on + strand at 353.002 kb on + strand at 353.003 kb on - strand at 353.003 kb on - strand at 353.009 kb on - strand at 353.053 kb on + strand at 353.054 kb on - strand at 353.054 kb on - strand at 353.114 kb on - strand, within GFF333 at 353.369 kb on + strand, within GFF333 at 353.369 kb on + strand, within GFF333 at 353.370 kb on - strand, within GFF333 at 353.370 kb on - strand, within GFF333 at 353.370 kb on - strand, within GFF333 at 353.370 kb on - strand, within GFF333 at 353.370 kb on - strand, within GFF333 at 353.575 kb on + strand, within GFF333
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 350,873 - GFF330 0.21 -0.0 350,890 + GFF330 0.25 -0.5 350,932 + GFF330 0.36 -0.2 350,933 - GFF330 0.36 +0.7 350,933 - GFF330 0.36 +1.4 351,043 + GFF330 0.64 -0.6 351,195 + -0.1 351,213 - -0.1 351,313 + GFF331 0.19 +0.8 351,475 + GFF331 0.56 +0.1 351,476 - GFF331 0.57 -0.6 351,476 - GFF331 0.57 -0.7 351,527 - GFF331 0.69 +0.4 351,766 + -0.1 352,296 + GFF332 0.43 -0.2 352,296 + GFF332 0.43 -0.5 352,296 + GFF332 0.43 -0.7 352,366 - GFF332 0.49 -1.1 352,574 + GFF332 0.68 +0.9 352,574 + GFF332 0.68 -0.8 352,574 + GFF332 0.68 -0.9 352,601 + GFF332 0.70 +0.3 352,601 + GFF332 0.70 -0.7 352,602 - GFF332 0.70 -0.4 352,979 + -0.2 352,980 - +0.3 352,980 - -0.3 352,980 - +0.5 353,002 + -0.9 353,002 + +0.4 353,003 - -0.3 353,003 - -0.2 353,009 - -0.1 353,053 + +0.3 353,054 - -1.9 353,054 - -1.0 353,114 - GFF333 0.11 +0.6 353,369 + GFF333 0.37 -0.0 353,369 + GFF333 0.37 -0.5 353,370 - GFF333 0.37 +0.7 353,370 - GFF333 0.37 -0.2 353,370 - GFF333 0.37 -0.6 353,370 - GFF333 0.37 +0.6 353,370 - GFF333 0.37 -1.8 353,575 + GFF333 0.58 +0.4
Or see this region's nucleotide sequence