Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3169

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3167 and GFF3168 are separated by 62 nucleotidesGFF3168 and GFF3169 are separated by 89 nucleotidesGFF3169 and GFF3170 are separated by 72 nucleotides GFF3167 - FIG00575819: hypothetical protein, at 44,884 to 46,524 GFF3167 GFF3168 - hypothetical protein, at 46,587 to 46,838 GFF3168 GFF3169 - hypothetical protein, at 46,928 to 47,176 GFF3169 GFF3170 - hypothetical protein, at 47,249 to 47,851 GFF3170 Position (kb) 46 47 48Strain fitness (log2 ratio) -1 0 1at 46.511 kb on - strandat 46.844 kb on - strandat 47.461 kb on - strand, within GFF3170at 47.722 kb on + strand, within GFF3170at 47.967 kb on - strandat 48.085 kb on - strandat 48.169 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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46,511 - +1.1
46,844 - -1.3
47,461 - GFF3170 0.35 +1.7
47,722 + GFF3170 0.78 +0.0
47,967 - +0.1
48,085 - -0.9
48,169 + -0.8

Or see this region's nucleotide sequence