Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3080

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3078 and GFF3079 are separated by 56 nucleotidesGFF3079 and GFF3080 are separated by 95 nucleotidesGFF3080 and GFF3081 are separated by 11 nucleotides GFF3078 - FIG00581584: hypothetical protein, at 155,494 to 156,303 GFF3078 GFF3079 - Transcriptional regulator, TetR family, at 156,360 to 156,932 GFF3079 GFF3080 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 157,028 to 157,489 GFF3080 GFF3081 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 157,501 to 159,765 GFF3081 Position (kb) 157 158Strain fitness (log2 ratio) -2 -1 0 1at 156.172 kb on + strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.173 kb on - strand, within GFF3078at 156.280 kb on + strandat 156.280 kb on + strandat 156.281 kb on - strandat 156.281 kb on - strandat 156.333 kb on + strandat 156.485 kb on + strand, within GFF3079at 156.485 kb on + strand, within GFF3079at 156.486 kb on - strand, within GFF3079at 156.486 kb on - strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.498 kb on + strand, within GFF3079at 156.498 kb on + strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.534 kb on + strand, within GFF3079at 156.534 kb on + strand, within GFF3079at 156.535 kb on - strand, within GFF3079at 156.535 kb on - strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.682 kb on - strand, within GFF3079at 156.682 kb on - strand, within GFF3079at 156.684 kb on + strand, within GFF3079at 156.684 kb on + strand, within GFF3079at 156.684 kb on + strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.969 kb on - strandat 156.995 kb on + strandat 156.996 kb on - strandat 156.996 kb on - strandat 157.002 kb on - strandat 157.002 kb on - strandat 157.439 kb on + strand, within GFF3080at 157.439 kb on + strand, within GFF3080at 157.440 kb on - strand, within GFF3080at 157.440 kb on - strand, within GFF3080at 157.440 kb on - strand, within GFF3080at 157.652 kb on - strandat 157.885 kb on + strand, within GFF3081at 157.885 kb on + strand, within GFF3081at 157.886 kb on - strand, within GFF3081at 157.886 kb on - strand, within GFF3081at 157.945 kb on + strand, within GFF3081at 157.945 kb on + strand, within GFF3081at 157.945 kb on + strand, within GFF3081at 157.945 kb on + strand, within GFF3081at 157.945 kb on + strand, within GFF3081at 157.945 kb on + strand, within GFF3081at 157.945 kb on + strand, within GFF3081at 157.946 kb on - strand, within GFF3081at 157.946 kb on - strand, within GFF3081at 157.946 kb on - strand, within GFF3081

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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156,172 + GFF3078 0.84 -0.4
156,172 + GFF3078 0.84 -0.2
156,172 + GFF3078 0.84 +0.3
156,172 + GFF3078 0.84 -0.7
156,173 - GFF3078 0.84 +0.2
156,280 + +0.0
156,280 + -0.1
156,281 - -0.2
156,281 - -0.2
156,333 + +0.2
156,485 + GFF3079 0.22 +1.1
156,485 + GFF3079 0.22 -1.3
156,486 - GFF3079 0.22 -1.1
156,486 - GFF3079 0.22 -0.8
156,492 + GFF3079 0.23 -1.0
156,492 + GFF3079 0.23 -0.8
156,492 + GFF3079 0.23 -0.1
156,492 + GFF3079 0.23 -0.7
156,492 + GFF3079 0.23 -1.8
156,492 + GFF3079 0.23 -2.5
156,492 + GFF3079 0.23 -1.8
156,492 + GFF3079 0.23 -0.1
156,492 + GFF3079 0.23 -0.4
156,493 - GFF3079 0.23 -0.6
156,493 - GFF3079 0.23 +0.0
156,493 - GFF3079 0.23 -1.5
156,493 - GFF3079 0.23 +0.0
156,493 - GFF3079 0.23 -0.6
156,498 + GFF3079 0.24 -0.4
156,498 + GFF3079 0.24 -0.8
156,499 - GFF3079 0.24 -1.4
156,499 - GFF3079 0.24 -0.4
156,499 - GFF3079 0.24 -0.9
156,499 - GFF3079 0.24 +0.0
156,499 - GFF3079 0.24 +0.5
156,534 + GFF3079 0.30 -1.0
156,534 + GFF3079 0.30 -0.3
156,535 - GFF3079 0.31 -0.6
156,535 - GFF3079 0.31 -0.8
156,681 + GFF3079 0.56 -0.8
156,681 + GFF3079 0.56 -0.4
156,681 + GFF3079 0.56 -0.5
156,681 + GFF3079 0.56 +0.6
156,682 - GFF3079 0.56 +0.4
156,682 - GFF3079 0.56 -0.4
156,684 + GFF3079 0.57 +0.6
156,684 + GFF3079 0.57 +1.3
156,684 + GFF3079 0.57 +0.3
156,685 - GFF3079 0.57 -0.5
156,685 - GFF3079 0.57 -0.7
156,685 - GFF3079 0.57 -0.6
156,685 - GFF3079 0.57 -0.2
156,685 - GFF3079 0.57 -0.4
156,969 - -0.1
156,995 + -0.2
156,996 - +0.9
156,996 - -0.0
157,002 - -1.2
157,002 - +0.3
157,439 + GFF3080 0.89 +0.1
157,439 + GFF3080 0.89 -0.4
157,440 - GFF3080 0.89 +0.2
157,440 - GFF3080 0.89 -0.9
157,440 - GFF3080 0.89 -0.5
157,652 - -0.0
157,885 + GFF3081 0.17 +1.0
157,885 + GFF3081 0.17 +0.2
157,886 - GFF3081 0.17 -1.7
157,886 - GFF3081 0.17 -0.3
157,945 + GFF3081 0.20 -0.5
157,945 + GFF3081 0.20 -0.3
157,945 + GFF3081 0.20 +1.3
157,945 + GFF3081 0.20 +0.1
157,945 + GFF3081 0.20 +0.0
157,945 + GFF3081 0.20 +0.7
157,945 + GFF3081 0.20 -0.6
157,946 - GFF3081 0.20 -0.7
157,946 - GFF3081 0.20 -0.4
157,946 - GFF3081 0.20 +0.6

Or see this region's nucleotide sequence