Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3021 and GFF3022 are separated by 4 nucleotides GFF3022 and GFF3023 are separated by 1 nucleotides GFF3023 and GFF3024 are separated by 64 nucleotides GFF3024 and GFF3025 are separated by 5 nucleotides
GFF3021 - Alkanesulfonates transport system permease protein, at 98,105 to 98,932
GFF3021
GFF3022 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 98,937 to 99,749
GFF3022
GFF3023 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 99,751 to 100,776
GFF3023
GFF3024 - Glutamine amidotransferase, class-II, at 100,841 to 101,605
GFF3024
GFF3025 - Multidrug resistance protein B, at 101,611 to 103,116
GFF3025
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.963 kb on - strand at 99.496 kb on + strand, within GFF3022 at 99.496 kb on + strand, within GFF3022 at 99.496 kb on + strand, within GFF3022 at 99.496 kb on + strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.676 kb on + strand at 99.676 kb on + strand at 99.801 kb on - strand at 99.801 kb on - strand at 99.941 kb on + strand, within GFF3023 at 99.942 kb on - strand, within GFF3023 at 99.965 kb on + strand, within GFF3023 at 99.965 kb on + strand, within GFF3023 at 100.619 kb on + strand, within GFF3023 at 100.620 kb on - strand, within GFF3023 at 100.653 kb on - strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 101.265 kb on + strand, within GFF3024 at 101.265 kb on + strand, within GFF3024 at 101.266 kb on - strand, within GFF3024 at 101.612 kb on + strand at 101.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 98,963 - +0.3 99,496 + GFF3022 0.69 -0.4 99,496 + GFF3022 0.69 +1.9 99,496 + GFF3022 0.69 -0.1 99,496 + GFF3022 0.69 +0.2 99,497 - GFF3022 0.69 -0.1 99,497 - GFF3022 0.69 +0.3 99,497 - GFF3022 0.69 +1.3 99,497 - GFF3022 0.69 -0.1 99,497 - GFF3022 0.69 +0.2 99,676 + -0.2 99,676 + +0.8 99,801 - +0.0 99,801 - -1.4 99,941 + GFF3023 0.19 -2.0 99,942 - GFF3023 0.19 +0.5 99,965 + GFF3023 0.21 +0.0 99,965 + GFF3023 0.21 +0.4 100,619 + GFF3023 0.85 -1.0 100,620 - GFF3023 0.85 +0.3 100,653 - GFF3023 0.88 +0.6 100,655 + GFF3023 0.88 -0.8 100,655 + GFF3023 0.88 -0.4 100,655 + GFF3023 0.88 -0.8 100,655 + GFF3023 0.88 -0.4 100,655 + GFF3023 0.88 -0.5 100,655 + GFF3023 0.88 -0.1 100,655 + GFF3023 0.88 -0.5 100,656 - GFF3023 0.88 -0.6 100,656 - GFF3023 0.88 +0.6 100,656 - GFF3023 0.88 -1.1 100,656 - GFF3023 0.88 +0.2 100,656 - GFF3023 0.88 +0.1 101,265 + GFF3024 0.55 +0.3 101,265 + GFF3024 0.55 +1.2 101,266 - GFF3024 0.56 +1.9 101,612 + +0.3 101,613 - -0.4
Or see this region's nucleotide sequence