Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2969

Experiment: Ying_all64 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 2
46,198	-		GFF2967	0.62	-0.6
46,203	+		GFF2967	0.63	+0.1
46,293	+		GFF2967	0.70	-0.3
46,294	-		GFF2967	0.71	-0.9
46,443	+		GFF2967	0.84	-0.3
46,555	-				+0.7
46,910	+		GFF2968	0.67	-0.3
46,910	+		GFF2968	0.67	+0.7
46,910	+		GFF2968	0.67	+1.1
46,910	+		GFF2968	0.67	+0.6
46,911	-		GFF2968	0.68	+1.0
47,046	+				+1.8
47,046	+				-0.1
47,046	+				+0.1
47,047	-				+1.3
47,047	-				-0.6
47,240	-		GFF2969	0.12	-1.1
47,240	-		GFF2969	0.12	-0.9
47,323	+		GFF2969	0.17	+0.0
47,323	+		GFF2969	0.17	-0.4
47,324	-		GFF2969	0.17	-0.1
47,324	-		GFF2969	0.17	-0.4
47,509	+		GFF2969	0.29	-0.1
47,509	+		GFF2969	0.29	+0.4
47,555	-		GFF2969	0.31	+1.8
47,704	+		GFF2969	0.41	-1.1
47,705	-		GFF2969	0.41	+0.6
47,705	-		GFF2969	0.41	+0.7
47,705	-		GFF2969	0.41	+1.2
47,866	+		GFF2969	0.51	-0.3
47,866	+		GFF2969	0.51	-1.2
47,867	-		GFF2969	0.51	+0.4
47,936	-		GFF2969	0.55	+0.1
47,936	-		GFF2969	0.55	-0.1
47,959	+		GFF2969	0.56	+1.6
47,960	-		GFF2969	0.56	-0.0
48,053	-		GFF2969	0.62	+1.2
48,121	+		GFF2969	0.66	-1.4
48,121	+		GFF2969	0.66	+1.8
48,121	+		GFF2969	0.66	-0.5
48,122	-		GFF2969	0.66	-0.0
48,199	+		GFF2969	0.71	-1.3
48,199	+		GFF2969	0.71	-1.3
48,199	+		GFF2969	0.71	+0.6
48,200	-		GFF2969	0.71	+0.6
48,208	+		GFF2969	0.72	+0.6
48,209	-		GFF2969	0.72	-0.0
48,209	-		GFF2969	0.72	-0.5
48,358	+		GFF2969	0.81	+0.3
48,359	-		GFF2969	0.81	+0.6
48,467	-		GFF2969	0.88	-0.1
48,467	-		GFF2969	0.88	+0.1
48,530	-				-2.5
49,042	-		GFF2970	0.46	-0.1
49,042	-		GFF2970	0.46	+0.8
49,128	+		GFF2970	0.57	-0.1
49,128	+		GFF2970	0.57	-0.0
49,128	+		GFF2970	0.57	-0.1
49,129	-		GFF2970	0.57	-0.8
49,129	-		GFF2970	0.57	-1.7
49,257	+		GFF2970	0.73	+0.1
49,257	+		GFF2970	0.73	-0.1
49,257	+		GFF2970	0.73	-0.0
49,258	-		GFF2970	0.73	-0.9
49,258	-		GFF2970	0.73	-0.6
49,258	-		GFF2970	0.73	-2.2
49,258	-		GFF2970	0.73	+1.5
49,288	-		GFF2970	0.77	-0.6
49,480	+				-0.4
49,480	+				-0.5
49,480	+				-1.3
49,480	+				-0.8
49,480	+				+0.2
49,480	+				-0.3
49,480	+				-2.0
49,481	-				-0.6
49,481	-				+0.5
49,481	-				-1.5
49,481	-				-0.4
49,550	-				-0.6
49,550	-				-0.1