Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2841 and GFF2842 are separated by 3 nucleotides GFF2842 and GFF2843 are separated by 14 nucleotides GFF2843 and GFF2844 are separated by 121 nucleotides
GFF2841 - Transcriptional regulator, TetR family, at 433,278 to 433,907
GFF2841
GFF2842 - Enoyl-CoA hydratase (EC 4.2.1.17), at 433,911 to 434,726
GFF2842
GFF2843 - FIG00455451: hypothetical protein, at 434,741 to 435,178
GFF2843
GFF2844 - LysR family transcriptional regulator PA2758, at 435,300 to 436,199
GFF2844
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.109 kb on + strand, within GFF2842 at 434.326 kb on - strand, within GFF2842 at 434.326 kb on - strand, within GFF2842 at 434.338 kb on - strand, within GFF2842 at 434.592 kb on + strand, within GFF2842 at 434.593 kb on - strand, within GFF2842 at 434.593 kb on - strand, within GFF2842 at 434.820 kb on + strand, within GFF2843 at 434.820 kb on + strand, within GFF2843 at 434.820 kb on + strand, within GFF2843 at 434.820 kb on + strand, within GFF2843 at 434.820 kb on + strand, within GFF2843 at 434.820 kb on + strand, within GFF2843 at 434.821 kb on - strand, within GFF2843 at 434.821 kb on - strand, within GFF2843 at 434.821 kb on - strand, within GFF2843 at 434.821 kb on - strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.015 kb on + strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.016 kb on - strand, within GFF2843 at 435.138 kb on + strand at 435.138 kb on + strand at 435.138 kb on + strand at 435.139 kb on - strand at 435.139 kb on - strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.150 kb on + strand at 435.151 kb on - strand at 435.151 kb on - strand at 435.238 kb on + strand at 435.238 kb on + strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 435.239 kb on - strand at 436.011 kb on + strand, within GFF2844 at 436.011 kb on + strand, within GFF2844
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 434,109 + GFF2842 0.24 -0.3 434,109 + GFF2842 0.24 -0.3 434,109 + GFF2842 0.24 +0.6 434,109 + GFF2842 0.24 -0.8 434,109 + GFF2842 0.24 +0.6 434,109 + GFF2842 0.24 -0.6 434,326 - GFF2842 0.51 -0.1 434,326 - GFF2842 0.51 -1.0 434,338 - GFF2842 0.52 -0.4 434,592 + GFF2842 0.83 -0.3 434,593 - GFF2842 0.84 +0.5 434,593 - GFF2842 0.84 +0.6 434,820 + GFF2843 0.18 -0.7 434,820 + GFF2843 0.18 -0.2 434,820 + GFF2843 0.18 +0.6 434,820 + GFF2843 0.18 -0.1 434,820 + GFF2843 0.18 +0.1 434,820 + GFF2843 0.18 +0.6 434,821 - GFF2843 0.18 +0.3 434,821 - GFF2843 0.18 -0.8 434,821 - GFF2843 0.18 -3.5 434,821 - GFF2843 0.18 -0.3 435,015 + GFF2843 0.63 -1.1 435,015 + GFF2843 0.63 -1.0 435,015 + GFF2843 0.63 +0.6 435,015 + GFF2843 0.63 -0.0 435,015 + GFF2843 0.63 +0.7 435,015 + GFF2843 0.63 -0.8 435,015 + GFF2843 0.63 -1.2 435,015 + GFF2843 0.63 -1.8 435,016 - GFF2843 0.63 -0.4 435,016 - GFF2843 0.63 -0.3 435,016 - GFF2843 0.63 +0.4 435,016 - GFF2843 0.63 -0.3 435,016 - GFF2843 0.63 -1.3 435,016 - GFF2843 0.63 -0.8 435,138 + +1.3 435,138 + +0.7 435,138 + -0.8 435,139 - -1.1 435,139 - -0.7 435,150 + -0.9 435,150 + -0.1 435,150 + -0.9 435,150 + -0.7 435,150 + -0.3 435,150 + -0.3 435,150 + -0.2 435,150 + -0.4 435,150 + -0.1 435,151 - -0.3 435,151 - -0.2 435,238 + -0.2 435,238 + -0.0 435,239 - +0.0 435,239 - +0.6 435,239 - +0.8 435,239 - -0.2 435,239 - -0.5 435,239 - -0.0 436,011 + GFF2844 0.79 +0.2 436,011 + GFF2844 0.79 -0.1
Or see this region's nucleotide sequence