Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2807 and GFF2808 are separated by 26 nucleotides GFF2808 and GFF2809 are separated by 165 nucleotides GFF2809 and GFF2810 overlap by 1 nucleotides
GFF2807 - Glycerol kinase (EC 2.7.1.30), at 405,673 to 407,166
GFF2807
GFF2808 - Glycerol-3-phosphate regulon repressor, DeoR family, at 407,193 to 407,975
GFF2808
GFF2809 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 408,141 to 409,217
GFF2809
GFF2810 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 409,217 to 410,293
GFF2810
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2 at 407.159 kb on + strand at 407.160 kb on - strand at 408.013 kb on + strand at 408.013 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.045 kb on - strand at 408.048 kb on + strand at 408.048 kb on + strand at 408.049 kb on - strand at 408.067 kb on + strand at 408.067 kb on + strand at 408.080 kb on + strand at 408.081 kb on - strand at 408.081 kb on - strand at 408.195 kb on + strand at 408.379 kb on - strand, within GFF2809 at 408.379 kb on - strand, within GFF2809 at 408.396 kb on + strand, within GFF2809 at 408.397 kb on - strand, within GFF2809 at 408.397 kb on - strand, within GFF2809 at 408.627 kb on + strand, within GFF2809 at 408.628 kb on - strand, within GFF2809 at 408.628 kb on - strand, within GFF2809 at 408.696 kb on + strand, within GFF2809 at 408.697 kb on - strand, within GFF2809 at 409.134 kb on + strand at 409.134 kb on + strand at 409.135 kb on - strand at 409.280 kb on + strand at 409.325 kb on + strand, within GFF2810 at 409.490 kb on + strand, within GFF2810 at 409.490 kb on + strand, within GFF2810 at 409.490 kb on + strand, within GFF2810 at 409.490 kb on + strand, within GFF2810 at 409.491 kb on - strand, within GFF2810 at 409.491 kb on - strand, within GFF2810 at 409.799 kb on + strand, within GFF2810 at 409.799 kb on + strand, within GFF2810 at 409.800 kb on - strand, within GFF2810 at 410.140 kb on + strand, within GFF2810 at 410.140 kb on + strand, within GFF2810 at 410.141 kb on - strand, within GFF2810 at 410.141 kb on - strand, within GFF2810 at 410.144 kb on + strand, within GFF2810 at 410.144 kb on + strand, within GFF2810 at 410.144 kb on + strand, within GFF2810 at 410.145 kb on - strand, within GFF2810 at 410.145 kb on - strand, within GFF2810 at 410.145 kb on - strand, within GFF2810 at 410.145 kb on - strand, within GFF2810 at 410.145 kb on - strand, within GFF2810
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 407,159 + +2.4 407,160 - +0.4 408,013 + -1.0 408,013 + +0.9 408,044 + +2.2 408,044 + +1.4 408,045 - +1.2 408,048 + +0.5 408,048 + +1.3 408,049 - +0.2 408,067 + -0.7 408,067 + -1.2 408,080 + -0.5 408,081 - +0.5 408,081 - -1.9 408,195 + -0.7 408,379 - GFF2809 0.22 -0.0 408,379 - GFF2809 0.22 +1.3 408,396 + GFF2809 0.24 +0.1 408,397 - GFF2809 0.24 +0.1 408,397 - GFF2809 0.24 -0.4 408,627 + GFF2809 0.45 +0.5 408,628 - GFF2809 0.45 -1.2 408,628 - GFF2809 0.45 -0.1 408,696 + GFF2809 0.52 -1.0 408,697 - GFF2809 0.52 -1.3 409,134 + +0.2 409,134 + +0.1 409,135 - -0.8 409,280 + +0.2 409,325 + GFF2810 0.10 +2.0 409,490 + GFF2810 0.25 +0.5 409,490 + GFF2810 0.25 +0.2 409,490 + GFF2810 0.25 -0.0 409,490 + GFF2810 0.25 +0.1 409,491 - GFF2810 0.25 -1.7 409,491 - GFF2810 0.25 -1.0 409,799 + GFF2810 0.54 -1.0 409,799 + GFF2810 0.54 +1.1 409,800 - GFF2810 0.54 -1.4 410,140 + GFF2810 0.86 -0.1 410,140 + GFF2810 0.86 -0.6 410,141 - GFF2810 0.86 -0.0 410,141 - GFF2810 0.86 -0.4 410,144 + GFF2810 0.86 -1.2 410,144 + GFF2810 0.86 +2.3 410,144 + GFF2810 0.86 -0.4 410,145 - GFF2810 0.86 -0.3 410,145 - GFF2810 0.86 -1.2 410,145 - GFF2810 0.86 -0.5 410,145 - GFF2810 0.86 -0.8 410,145 - GFF2810 0.86 +1.0
Or see this region's nucleotide sequence