Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2744 and GFF2745 are separated by 119 nucleotides GFF2745 and GFF2746 are separated by 60 nucleotides GFF2746 and GFF2747 are separated by 37 nucleotides
GFF2744 - Fumarylacetoacetate hydrolase family protein, at 340,468 to 341,478
GFF2744
GFF2745 - ring-cleaving dioxygenase, putative, at 341,598 to 342,050
GFF2745
GFF2746 - Enoyl-CoA hydratase (EC 4.2.1.17), at 342,111 to 342,953
GFF2746
GFF2747 - Alginate regulatory protein AlgP, at 342,991 to 343,818
GFF2747
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1
2 at 340.624 kb on + strand, within GFF2744 at 340.624 kb on + strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.625 kb on - strand, within GFF2744 at 340.706 kb on - strand, within GFF2744 at 340.706 kb on - strand, within GFF2744 at 340.729 kb on + strand, within GFF2744 at 340.730 kb on - strand, within GFF2744 at 340.730 kb on - strand, within GFF2744 at 340.789 kb on + strand, within GFF2744 at 340.790 kb on - strand, within GFF2744 at 340.790 kb on - strand, within GFF2744 at 340.807 kb on + strand, within GFF2744 at 340.807 kb on + strand, within GFF2744 at 340.808 kb on - strand, within GFF2744 at 340.808 kb on - strand, within GFF2744 at 340.808 kb on - strand, within GFF2744 at 340.850 kb on - strand, within GFF2744 at 341.314 kb on + strand, within GFF2744 at 341.314 kb on + strand, within GFF2744 at 341.315 kb on - strand, within GFF2744 at 341.315 kb on - strand, within GFF2744 at 341.315 kb on - strand, within GFF2744 at 341.599 kb on + strand at 341.599 kb on + strand at 341.599 kb on + strand at 341.600 kb on - strand at 341.600 kb on - strand at 341.600 kb on - strand at 341.600 kb on - strand at 341.600 kb on - strand at 341.608 kb on + strand at 341.608 kb on + strand at 341.609 kb on - strand at 341.609 kb on - strand at 341.609 kb on - strand at 341.950 kb on + strand, within GFF2745 at 341.950 kb on + strand, within GFF2745 at 341.950 kb on + strand, within GFF2745 at 341.951 kb on - strand, within GFF2745 at 341.951 kb on - strand, within GFF2745 at 342.051 kb on - strand at 342.129 kb on + strand at 342.130 kb on - strand at 342.139 kb on - strand at 342.441 kb on + strand, within GFF2746 at 342.441 kb on + strand, within GFF2746 at 342.442 kb on - strand, within GFF2746 at 342.442 kb on - strand, within GFF2746 at 342.648 kb on + strand, within GFF2746 at 342.648 kb on + strand, within GFF2746 at 342.649 kb on - strand, within GFF2746 at 342.649 kb on - strand, within GFF2746 at 342.649 kb on - strand, within GFF2746 at 342.649 kb on - strand, within GFF2746 at 342.651 kb on + strand, within GFF2746 at 342.652 kb on - strand, within GFF2746 at 342.747 kb on + strand, within GFF2746 at 342.747 kb on + strand, within GFF2746 at 342.747 kb on + strand, within GFF2746 at 342.748 kb on - strand, within GFF2746 at 342.804 kb on + strand, within GFF2746 at 342.805 kb on - strand, within GFF2746 at 342.967 kb on + strand at 342.967 kb on + strand at 342.968 kb on - strand at 342.968 kb on - strand at 342.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 340,624 + GFF2744 0.15 +0.1 340,624 + GFF2744 0.15 -1.5 340,625 - GFF2744 0.16 -0.8 340,625 - GFF2744 0.16 -0.7 340,625 - GFF2744 0.16 -0.3 340,625 - GFF2744 0.16 +0.2 340,625 - GFF2744 0.16 +0.1 340,625 - GFF2744 0.16 -0.4 340,625 - GFF2744 0.16 -0.9 340,625 - GFF2744 0.16 -0.4 340,706 - GFF2744 0.24 -0.0 340,706 - GFF2744 0.24 +0.2 340,729 + GFF2744 0.26 -0.9 340,730 - GFF2744 0.26 -0.2 340,730 - GFF2744 0.26 -0.2 340,789 + GFF2744 0.32 -0.2 340,790 - GFF2744 0.32 +1.5 340,790 - GFF2744 0.32 +0.8 340,807 + GFF2744 0.34 -1.1 340,807 + GFF2744 0.34 -0.6 340,808 - GFF2744 0.34 -0.8 340,808 - GFF2744 0.34 +1.1 340,808 - GFF2744 0.34 +0.4 340,850 - GFF2744 0.38 -2.2 341,314 + GFF2744 0.84 -0.9 341,314 + GFF2744 0.84 +0.4 341,315 - GFF2744 0.84 -1.0 341,315 - GFF2744 0.84 +1.1 341,315 - GFF2744 0.84 -0.4 341,599 + -0.6 341,599 + -1.7 341,599 + -0.3 341,600 - -0.9 341,600 - +2.1 341,600 - -1.4 341,600 - -0.8 341,600 - +0.6 341,608 + -0.3 341,608 + -1.3 341,609 - -0.0 341,609 - -0.2 341,609 - +0.8 341,950 + GFF2745 0.78 -0.6 341,950 + GFF2745 0.78 -0.5 341,950 + GFF2745 0.78 -0.9 341,951 - GFF2745 0.78 -0.9 341,951 - GFF2745 0.78 -0.1 342,051 - -0.7 342,129 + -0.4 342,130 - -0.5 342,139 - +0.2 342,441 + GFF2746 0.39 +0.1 342,441 + GFF2746 0.39 -0.6 342,442 - GFF2746 0.39 +0.1 342,442 - GFF2746 0.39 +0.6 342,648 + GFF2746 0.64 +0.3 342,648 + GFF2746 0.64 +0.6 342,649 - GFF2746 0.64 -0.3 342,649 - GFF2746 0.64 +0.5 342,649 - GFF2746 0.64 +0.5 342,649 - GFF2746 0.64 -0.4 342,651 + GFF2746 0.64 -0.5 342,652 - GFF2746 0.64 +0.3 342,747 + GFF2746 0.75 -0.6 342,747 + GFF2746 0.75 -0.0 342,747 + GFF2746 0.75 +0.6 342,748 - GFF2746 0.76 +0.3 342,804 + GFF2746 0.82 -0.3 342,805 - GFF2746 0.82 +1.7 342,967 + -0.3 342,967 + +0.1 342,968 - -1.1 342,968 - +0.9 342,968 - -0.7
Or see this region's nucleotide sequence