Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2622 and GFF2623 are separated by 251 nucleotides GFF2623 and GFF2624 are separated by 168 nucleotides
GFF2622 - DNA polymerase III delta subunit (EC 2.7.7.7), at 214,235 to 215,287
GFF2622
GFF2623 - transcriptional regulator, AraC family, at 215,539 to 216,519
GFF2623
GFF2624 - Putative branched-chain amino acid transporter substrate-binding protein, at 216,688 to 217,884
GFF2624
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 215.285 kb on + strand at 215.285 kb on + strand at 215.323 kb on + strand at 215.323 kb on + strand at 215.447 kb on - strand at 215.447 kb on - strand at 215.738 kb on + strand, within GFF2623 at 215.738 kb on + strand, within GFF2623 at 215.738 kb on + strand, within GFF2623 at 215.738 kb on + strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.739 kb on - strand, within GFF2623 at 215.751 kb on + strand, within GFF2623 at 215.751 kb on + strand, within GFF2623 at 215.751 kb on + strand, within GFF2623 at 215.752 kb on - strand, within GFF2623 at 215.752 kb on - strand, within GFF2623 at 215.752 kb on - strand, within GFF2623 at 215.752 kb on - strand, within GFF2623 at 216.005 kb on + strand, within GFF2623 at 216.006 kb on - strand, within GFF2623 at 216.183 kb on - strand, within GFF2623 at 216.273 kb on - strand, within GFF2623 at 216.401 kb on + strand, within GFF2623 at 216.796 kb on + strand at 216.856 kb on + strand, within GFF2624 at 216.856 kb on + strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 216.857 kb on - strand, within GFF2624 at 217.132 kb on + strand, within GFF2624 at 217.132 kb on + strand, within GFF2624 at 217.225 kb on + strand, within GFF2624 at 217.225 kb on + strand, within GFF2624 at 217.226 kb on - strand, within GFF2624 at 217.396 kb on + strand, within GFF2624 at 217.396 kb on + strand, within GFF2624 at 217.462 kb on + strand, within GFF2624 at 217.462 kb on + strand, within GFF2624 at 217.463 kb on - strand, within GFF2624 at 217.463 kb on - strand, within GFF2624 at 217.463 kb on - strand, within GFF2624 at 217.492 kb on + strand, within GFF2624
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 215,285 + -0.1 215,285 + +0.0 215,323 + +1.0 215,323 + -1.4 215,447 - -0.1 215,447 - +1.0 215,738 + GFF2623 0.20 -1.1 215,738 + GFF2623 0.20 +0.4 215,738 + GFF2623 0.20 -1.9 215,738 + GFF2623 0.20 -0.7 215,739 - GFF2623 0.20 -0.1 215,739 - GFF2623 0.20 -0.7 215,739 - GFF2623 0.20 +1.0 215,739 - GFF2623 0.20 -0.1 215,739 - GFF2623 0.20 +0.2 215,739 - GFF2623 0.20 -0.1 215,751 + GFF2623 0.22 -0.3 215,751 + GFF2623 0.22 +0.8 215,751 + GFF2623 0.22 +3.2 215,752 - GFF2623 0.22 -0.2 215,752 - GFF2623 0.22 -0.5 215,752 - GFF2623 0.22 +0.1 215,752 - GFF2623 0.22 +0.1 216,005 + GFF2623 0.48 +0.3 216,006 - GFF2623 0.48 -1.1 216,183 - GFF2623 0.66 -0.7 216,273 - GFF2623 0.75 +0.3 216,401 + GFF2623 0.88 +2.0 216,796 + -0.3 216,856 + GFF2624 0.14 -0.1 216,856 + GFF2624 0.14 +0.2 216,857 - GFF2624 0.14 +0.5 216,857 - GFF2624 0.14 -1.1 216,857 - GFF2624 0.14 -1.2 216,857 - GFF2624 0.14 -0.2 216,857 - GFF2624 0.14 -0.7 216,857 - GFF2624 0.14 -0.5 216,857 - GFF2624 0.14 -0.4 217,132 + GFF2624 0.37 -0.4 217,132 + GFF2624 0.37 -0.1 217,225 + GFF2624 0.45 -1.0 217,225 + GFF2624 0.45 -0.5 217,226 - GFF2624 0.45 -0.7 217,396 + GFF2624 0.59 -1.2 217,396 + GFF2624 0.59 +0.1 217,462 + GFF2624 0.65 +0.3 217,462 + GFF2624 0.65 +1.2 217,463 - GFF2624 0.65 -1.3 217,463 - GFF2624 0.65 -0.2 217,463 - GFF2624 0.65 -0.1 217,492 + GFF2624 0.67 -0.5
Or see this region's nucleotide sequence