Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2583 and GFF2584 are separated by 25 nucleotides GFF2584 and GFF2585 overlap by 1 nucleotides GFF2585 and GFF2586 are separated by 6 nucleotides
GFF2583 - Ferric iron ABC transporter, permease protein, at 177,332 to 179,062
GFF2583
GFF2584 - SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3), at 179,088 to 180,179
GFF2584
GFF2585 - LysR-family transcriptional regulator, at 180,179 to 181,075
GFF2585
GFF2586 - FIG039061: hypothetical protein related to heme utilization, at 181,082 to 181,483
GFF2586
Position (kb) 179
180
181 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 178.115 kb on + strand, within GFF2583 at 178.194 kb on - strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.266 kb on - strand, within GFF2583 at 178.370 kb on + strand, within GFF2583 at 178.370 kb on + strand, within GFF2583 at 178.370 kb on + strand, within GFF2583 at 178.385 kb on + strand, within GFF2583 at 178.386 kb on - strand, within GFF2583 at 178.436 kb on + strand, within GFF2583 at 178.437 kb on - strand, within GFF2583 at 178.533 kb on - strand, within GFF2583 at 178.584 kb on - strand, within GFF2583 at 178.664 kb on + strand, within GFF2583 at 178.910 kb on + strand at 178.911 kb on - strand at 178.919 kb on + strand at 178.919 kb on + strand at 178.919 kb on + strand at 178.920 kb on - strand at 178.925 kb on + strand at 178.925 kb on + strand at 178.926 kb on - strand at 178.926 kb on - strand at 178.926 kb on - strand at 179.003 kb on + strand at 179.349 kb on + strand, within GFF2584 at 179.475 kb on + strand, within GFF2584 at 179.475 kb on + strand, within GFF2584 at 180.188 kb on + strand at 180.188 kb on + strand at 180.188 kb on + strand at 180.614 kb on + strand, within GFF2585 at 180.672 kb on - strand, within GFF2585 at 180.857 kb on + strand, within GFF2585 at 180.858 kb on - strand, within GFF2585 at 180.984 kb on - strand, within GFF2585 at 180.984 kb on - strand, within GFF2585 at 180.984 kb on - strand, within GFF2585
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 178,115 + GFF2583 0.45 +2.1 178,194 - GFF2583 0.50 -0.1 178,265 + GFF2583 0.54 +1.6 178,265 + GFF2583 0.54 +0.2 178,265 + GFF2583 0.54 +0.5 178,265 + GFF2583 0.54 -0.5 178,265 + GFF2583 0.54 -0.3 178,265 + GFF2583 0.54 -0.2 178,265 + GFF2583 0.54 +0.7 178,265 + GFF2583 0.54 -0.3 178,265 + GFF2583 0.54 +1.1 178,266 - GFF2583 0.54 +0.4 178,370 + GFF2583 0.60 -0.5 178,370 + GFF2583 0.60 +0.0 178,370 + GFF2583 0.60 +0.1 178,385 + GFF2583 0.61 -0.2 178,386 - GFF2583 0.61 +0.6 178,436 + GFF2583 0.64 -0.1 178,437 - GFF2583 0.64 -0.2 178,533 - GFF2583 0.69 +0.7 178,584 - GFF2583 0.72 +0.3 178,664 + GFF2583 0.77 +0.2 178,910 + +3.3 178,911 - +4.3 178,919 + +0.4 178,919 + +1.3 178,919 + +0.9 178,920 - +4.6 178,925 + +2.9 178,925 + +2.2 178,926 - +4.2 178,926 - +3.7 178,926 - +4.4 179,003 + +4.0 179,349 + GFF2584 0.24 -0.5 179,475 + GFF2584 0.35 -0.3 179,475 + GFF2584 0.35 +1.5 180,188 + -0.7 180,188 + -1.3 180,188 + +0.6 180,614 + GFF2585 0.48 +0.5 180,672 - GFF2585 0.55 -0.3 180,857 + GFF2585 0.76 -0.1 180,858 - GFF2585 0.76 -1.0 180,984 - GFF2585 0.90 -0.7 180,984 - GFF2585 0.90 -0.1 180,984 - GFF2585 0.90 -0.2
Or see this region's nucleotide sequence