Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2548 and GFF2549 are separated by 17 nucleotides GFF2549 and GFF2550 are separated by 1 nucleotides
GFF2548 - Glycosyltransferase (EC 2.4.1.-), at 135,524 to 136,636
GFF2548
GFF2549 - hypothetical protein, at 136,654 to 137,640
GFF2549
GFF2550 - hypothetical protein, at 137,642 to 138,967
GFF2550
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.077 kb on + strand, within GFF2548 at 136.078 kb on - strand, within GFF2548 at 136.078 kb on - strand, within GFF2548 at 136.078 kb on - strand, within GFF2548 at 136.204 kb on - strand, within GFF2548 at 136.518 kb on + strand, within GFF2548 at 136.518 kb on + strand, within GFF2548 at 136.519 kb on - strand, within GFF2548 at 136.588 kb on - strand at 136.611 kb on + strand at 136.612 kb on - strand at 136.612 kb on - strand at 136.629 kb on + strand at 136.629 kb on + strand at 136.630 kb on - strand at 136.630 kb on - strand at 136.630 kb on - strand at 136.779 kb on - strand, within GFF2549 at 136.779 kb on - strand, within GFF2549 at 136.784 kb on + strand, within GFF2549 at 136.829 kb on + strand, within GFF2549 at 136.829 kb on + strand, within GFF2549 at 136.829 kb on + strand, within GFF2549 at 136.829 kb on - strand, within GFF2549 at 136.830 kb on - strand, within GFF2549 at 136.934 kb on + strand, within GFF2549 at 136.947 kb on - strand, within GFF2549 at 137.120 kb on + strand, within GFF2549 at 137.121 kb on - strand, within GFF2549 at 137.138 kb on + strand, within GFF2549 at 137.139 kb on - strand, within GFF2549 at 137.139 kb on - strand, within GFF2549 at 137.139 kb on - strand, within GFF2549 at 137.183 kb on + strand, within GFF2549 at 137.184 kb on - strand, within GFF2549 at 137.195 kb on + strand, within GFF2549 at 137.196 kb on - strand, within GFF2549 at 137.256 kb on - strand, within GFF2549 at 137.256 kb on - strand, within GFF2549 at 137.270 kb on + strand, within GFF2549 at 137.271 kb on - strand, within GFF2549 at 137.402 kb on + strand, within GFF2549 at 137.430 kb on - strand, within GFF2549 at 138.024 kb on + strand, within GFF2550 at 138.024 kb on + strand, within GFF2550 at 138.024 kb on + strand, within GFF2550 at 138.025 kb on - strand, within GFF2550 at 138.025 kb on - strand, within GFF2550 at 138.207 kb on + strand, within GFF2550 at 138.208 kb on - strand, within GFF2550 at 138.540 kb on + strand, within GFF2550 at 138.615 kb on + strand, within GFF2550 at 138.615 kb on + strand, within GFF2550 at 138.615 kb on + strand, within GFF2550 at 138.616 kb on - strand, within GFF2550
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 136,077 + GFF2548 0.50 +0.4 136,078 - GFF2548 0.50 -0.3 136,078 - GFF2548 0.50 -0.1 136,078 - GFF2548 0.50 -0.2 136,204 - GFF2548 0.61 +1.1 136,518 + GFF2548 0.89 +0.9 136,518 + GFF2548 0.89 -0.6 136,519 - GFF2548 0.89 -0.1 136,588 - +0.4 136,611 + -0.3 136,612 - +0.8 136,612 - +0.3 136,629 + -0.3 136,629 + -0.2 136,630 - -0.4 136,630 - -0.3 136,630 - -0.2 136,779 - GFF2549 0.13 +0.1 136,779 - GFF2549 0.13 -0.8 136,784 + GFF2549 0.13 -0.1 136,829 + GFF2549 0.18 -0.5 136,829 + GFF2549 0.18 -1.5 136,829 + GFF2549 0.18 +0.0 136,829 - GFF2549 0.18 -1.6 136,830 - GFF2549 0.18 -0.9 136,934 + GFF2549 0.28 -0.1 136,947 - GFF2549 0.30 -0.7 137,120 + GFF2549 0.47 +0.5 137,121 - GFF2549 0.47 +0.6 137,138 + GFF2549 0.49 -2.3 137,139 - GFF2549 0.49 +0.2 137,139 - GFF2549 0.49 -0.2 137,139 - GFF2549 0.49 +0.5 137,183 + GFF2549 0.54 -0.6 137,184 - GFF2549 0.54 +0.3 137,195 + GFF2549 0.55 -0.1 137,196 - GFF2549 0.55 +1.7 137,256 - GFF2549 0.61 -0.7 137,256 - GFF2549 0.61 +1.3 137,270 + GFF2549 0.62 +2.5 137,271 - GFF2549 0.63 -0.2 137,402 + GFF2549 0.76 -0.5 137,430 - GFF2549 0.79 -0.9 138,024 + GFF2550 0.29 +2.7 138,024 + GFF2550 0.29 -0.6 138,024 + GFF2550 0.29 +0.9 138,025 - GFF2550 0.29 +0.5 138,025 - GFF2550 0.29 -0.5 138,207 + GFF2550 0.43 -0.1 138,208 - GFF2550 0.43 +0.2 138,540 + GFF2550 0.68 -1.3 138,615 + GFF2550 0.73 -0.0 138,615 + GFF2550 0.73 -0.1 138,615 + GFF2550 0.73 -0.1 138,616 - GFF2550 0.73 +1.5
Or see this region's nucleotide sequence