Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2544 and GFF2545 are separated by 10 nucleotides GFF2545 and GFF2546 overlap by 8 nucleotides GFF2546 and GFF2547 overlap by 4 nucleotides
GFF2544 - Beta 1,4 glucosyltransferase, at 131,864 to 132,847
GFF2544
GFF2545 - putative NADH dehydrogenase/NAD(P)H nitroreductase, at 132,858 to 133,814
GFF2545
GFF2546 - Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-), at 133,807 to 134,379
GFF2546
GFF2547 - hypothetical protein, at 134,376 to 135,527
GFF2547
Position (kb) 133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 132.820 kb on - strand at 133.102 kb on + strand, within GFF2545 at 133.102 kb on + strand, within GFF2545 at 133.103 kb on - strand, within GFF2545 at 133.103 kb on - strand, within GFF2545 at 133.240 kb on + strand, within GFF2545 at 133.241 kb on - strand, within GFF2545 at 133.241 kb on - strand, within GFF2545 at 133.528 kb on + strand, within GFF2545 at 133.529 kb on - strand, within GFF2545 at 133.842 kb on - strand at 134.108 kb on + strand, within GFF2546 at 134.108 kb on + strand, within GFF2546 at 134.109 kb on - strand, within GFF2546 at 134.109 kb on - strand, within GFF2546 at 134.708 kb on - strand, within GFF2547 at 135.067 kb on + strand, within GFF2547 at 135.113 kb on - strand, within GFF2547 at 135.181 kb on + strand, within GFF2547 at 135.181 kb on + strand, within GFF2547 at 135.181 kb on + strand, within GFF2547 at 135.182 kb on - strand, within GFF2547 at 135.328 kb on + strand, within GFF2547 at 135.329 kb on - strand, within GFF2547 at 135.329 kb on - strand, within GFF2547
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 132,820 - +1.4 133,102 + GFF2545 0.25 -0.8 133,102 + GFF2545 0.25 -0.2 133,103 - GFF2545 0.26 -0.2 133,103 - GFF2545 0.26 +0.1 133,240 + GFF2545 0.40 -0.1 133,241 - GFF2545 0.40 -0.6 133,241 - GFF2545 0.40 +1.5 133,528 + GFF2545 0.70 -0.6 133,529 - GFF2545 0.70 +3.0 133,842 - -0.9 134,108 + GFF2546 0.53 -0.6 134,108 + GFF2546 0.53 -0.1 134,109 - GFF2546 0.53 -0.5 134,109 - GFF2546 0.53 -0.2 134,708 - GFF2547 0.29 -0.8 135,067 + GFF2547 0.60 -0.7 135,113 - GFF2547 0.64 +1.8 135,181 + GFF2547 0.70 -2.1 135,181 + GFF2547 0.70 +0.1 135,181 + GFF2547 0.70 -0.7 135,182 - GFF2547 0.70 -0.7 135,328 + GFF2547 0.83 +0.2 135,329 - GFF2547 0.83 -0.3 135,329 - GFF2547 0.83 +0.2
Or see this region's nucleotide sequence