Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2539 and GFF2540 are separated by 408 nucleotides GFF2540 and GFF2541 are separated by 13 nucleotides GFF2541 and GFF2542 overlap by 4 nucleotides
GFF2539 - Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-), at 125,101 to 126,141
GFF2539
GFF2540 - Tyrosine-protein kinase EpsD (EC 2.7.10.2), at 126,550 to 128,937
GFF2540
GFF2541 - GumB protein, at 128,951 to 129,688
GFF2541
GFF2542 - Colanic acid biosysnthesis glycosyl transferase WcaI, at 129,685 to 130,968
GFF2542
Position (kb) 126
127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 126.082 kb on + strand at 126.083 kb on - strand at 126.083 kb on - strand at 126.304 kb on + strand at 126.481 kb on + strand at 126.663 kb on - strand at 126.663 kb on - strand at 126.665 kb on + strand at 126.665 kb on + strand at 126.665 kb on + strand at 126.666 kb on - strand at 126.666 kb on - strand at 126.666 kb on - strand at 126.890 kb on + strand, within GFF2540 at 127.352 kb on + strand, within GFF2540 at 127.550 kb on - strand, within GFF2540 at 127.613 kb on + strand, within GFF2540 at 127.614 kb on - strand, within GFF2540 at 127.709 kb on + strand, within GFF2540 at 127.748 kb on + strand, within GFF2540 at 127.749 kb on - strand, within GFF2540 at 127.845 kb on - strand, within GFF2540 at 127.877 kb on + strand, within GFF2540 at 127.877 kb on + strand, within GFF2540 at 127.976 kb on + strand, within GFF2540 at 127.977 kb on - strand, within GFF2540 at 127.977 kb on - strand, within GFF2540 at 128.177 kb on + strand, within GFF2540 at 128.177 kb on + strand, within GFF2540 at 128.178 kb on - strand, within GFF2540 at 128.718 kb on - strand at 128.789 kb on + strand at 128.876 kb on + strand at 128.909 kb on + strand at 129.099 kb on + strand, within GFF2541 at 129.166 kb on - strand, within GFF2541 at 129.229 kb on - strand, within GFF2541 at 129.319 kb on - strand, within GFF2541 at 129.319 kb on - strand, within GFF2541 at 129.319 kb on - strand, within GFF2541 at 129.319 kb on - strand, within GFF2541 at 129.331 kb on - strand, within GFF2541 at 129.331 kb on - strand, within GFF2541
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 126,082 + -0.8 126,083 - -1.5 126,083 - -1.5 126,304 + -0.1 126,481 + -0.0 126,663 - -0.6 126,663 - -0.4 126,665 + -0.2 126,665 + -0.7 126,665 + +0.2 126,666 - -0.1 126,666 - +0.6 126,666 - -0.8 126,890 + GFF2540 0.14 +0.3 127,352 + GFF2540 0.34 +0.5 127,550 - GFF2540 0.42 +0.9 127,613 + GFF2540 0.45 -0.1 127,614 - GFF2540 0.45 -1.5 127,709 + GFF2540 0.49 +0.7 127,748 + GFF2540 0.50 +0.4 127,749 - GFF2540 0.50 +1.2 127,845 - GFF2540 0.54 -0.4 127,877 + GFF2540 0.56 -0.5 127,877 + GFF2540 0.56 +0.9 127,976 + GFF2540 0.60 -0.5 127,977 - GFF2540 0.60 -0.7 127,977 - GFF2540 0.60 +0.5 128,177 + GFF2540 0.68 +1.8 128,177 + GFF2540 0.68 -0.1 128,178 - GFF2540 0.68 -0.6 128,718 - -2.9 128,789 + +0.3 128,876 + -0.1 128,909 + -0.2 129,099 + GFF2541 0.20 -0.1 129,166 - GFF2541 0.29 -0.5 129,229 - GFF2541 0.38 +0.5 129,319 - GFF2541 0.50 +0.5 129,319 - GFF2541 0.50 +0.1 129,319 - GFF2541 0.50 +0.6 129,319 - GFF2541 0.50 -0.6 129,331 - GFF2541 0.51 -0.3 129,331 - GFF2541 0.51 -0.5
Or see this region's nucleotide sequence