Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2390 and GFF2391 are separated by 12 nucleotides GFF2391 and GFF2392 are separated by 47 nucleotides GFF2392 and GFF2393 are separated by 428 nucleotides
GFF2390 - Alkanesulfonates transport system permease protein, at 32,399 to 33,187
GFF2390
GFF2391 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 33,200 to 33,958
GFF2391
GFF2392 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 34,006 to 35,055
GFF2392
GFF2393 - Mobile element protein, at 35,484 to 36,107
GFF2393
Position (kb) 34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 33.072 kb on + strand, within GFF2390 at 33.246 kb on + strand at 33.875 kb on + strand, within GFF2391 at 34.208 kb on + strand, within GFF2392 at 34.209 kb on - strand, within GFF2392 at 34.274 kb on + strand, within GFF2392 at 34.274 kb on + strand, within GFF2392 at 34.274 kb on + strand, within GFF2392 at 34.481 kb on + strand, within GFF2392 at 34.481 kb on + strand, within GFF2392 at 34.481 kb on + strand, within GFF2392 at 34.481 kb on + strand, within GFF2392 at 34.481 kb on + strand, within GFF2392 at 34.535 kb on + strand, within GFF2392 at 34.559 kb on + strand, within GFF2392 at 34.559 kb on + strand, within GFF2392 at 34.560 kb on - strand, within GFF2392 at 34.560 kb on - strand, within GFF2392 at 34.560 kb on - strand, within GFF2392 at 34.644 kb on - strand, within GFF2392 at 34.802 kb on + strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.823 kb on + strand, within GFF2392 at 34.823 kb on + strand, within GFF2392 at 34.824 kb on - strand, within GFF2392 at 35.143 kb on + strand at 35.143 kb on + strand at 35.200 kb on + strand at 35.200 kb on + strand at 35.200 kb on + strand at 35.201 kb on - strand at 35.205 kb on - strand at 35.208 kb on + strand at 35.785 kb on - strand, within GFF2393 at 35.857 kb on - strand, within GFF2393 at 35.914 kb on + strand, within GFF2393 at 36.009 kb on + strand, within GFF2393
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 33,072 + GFF2390 0.85 +1.0 33,246 + -0.1 33,875 + GFF2391 0.89 +0.4 34,208 + GFF2392 0.19 +0.7 34,209 - GFF2392 0.19 -0.1 34,274 + GFF2392 0.26 +1.1 34,274 + GFF2392 0.26 +0.6 34,274 + GFF2392 0.26 +0.0 34,481 + GFF2392 0.45 -0.2 34,481 + GFF2392 0.45 +0.5 34,481 + GFF2392 0.45 +3.4 34,481 + GFF2392 0.45 -0.9 34,481 + GFF2392 0.45 +1.0 34,535 + GFF2392 0.50 +1.8 34,559 + GFF2392 0.53 -1.0 34,559 + GFF2392 0.53 +0.8 34,560 - GFF2392 0.53 -1.5 34,560 - GFF2392 0.53 +0.0 34,560 - GFF2392 0.53 +0.4 34,644 - GFF2392 0.61 -0.1 34,802 + GFF2392 0.76 -0.4 34,803 - GFF2392 0.76 +0.8 34,803 - GFF2392 0.76 -0.2 34,803 - GFF2392 0.76 -2.6 34,803 - GFF2392 0.76 +0.7 34,803 - GFF2392 0.76 +0.6 34,803 - GFF2392 0.76 +0.4 34,803 - GFF2392 0.76 -0.4 34,803 - GFF2392 0.76 +0.2 34,823 + GFF2392 0.78 +0.2 34,823 + GFF2392 0.78 +0.8 34,824 - GFF2392 0.78 +0.8 35,143 + -0.0 35,143 + -0.1 35,200 + +0.1 35,200 + +1.2 35,200 + -1.0 35,201 - -0.4 35,205 - -1.0 35,208 + -0.3 35,785 - GFF2393 0.48 -0.5 35,857 - GFF2393 0.60 +0.5 35,914 + GFF2393 0.69 -1.0 36,009 + GFF2393 0.84 +0.4
Or see this region's nucleotide sequence