Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF216

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF215 and GFF216 are separated by 102 nucleotidesGFF216 and GFF217 are separated by 18 nucleotides GFF215 - hypothetical protein, at 235,300 to 237,249 GFF215 GFF216 - Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-), at 237,352 to 238,362 GFF216 GFF217 - Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-), at 238,381 to 239,745 GFF217 Position (kb) 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 236.421 kb on - strand, within GFF215at 236.421 kb on - strand, within GFF215at 236.513 kb on + strand, within GFF215at 236.513 kb on + strand, within GFF215at 236.546 kb on + strand, within GFF215at 236.546 kb on + strand, within GFF215at 236.546 kb on + strand, within GFF215at 236.547 kb on - strand, within GFF215at 236.547 kb on - strand, within GFF215at 236.547 kb on - strand, within GFF215at 236.555 kb on + strand, within GFF215at 236.556 kb on - strand, within GFF215at 236.780 kb on + strand, within GFF215at 236.781 kb on - strand, within GFF215at 236.781 kb on - strand, within GFF215at 236.781 kb on - strand, within GFF215at 236.781 kb on - strand, within GFF215at 236.916 kb on - strand, within GFF215at 237.014 kb on + strand, within GFF215at 237.270 kb on - strandat 237.316 kb on + strandat 237.359 kb on + strandat 237.359 kb on + strandat 237.360 kb on - strandat 237.360 kb on - strandat 237.395 kb on + strandat 237.395 kb on + strandat 237.395 kb on + strandat 237.396 kb on - strandat 237.396 kb on - strandat 237.396 kb on - strandat 237.396 kb on - strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.401 kb on + strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.402 kb on - strandat 237.410 kb on + strandat 237.410 kb on + strandat 237.410 kb on + strandat 237.410 kb on + strandat 237.411 kb on - strandat 237.530 kb on + strand, within GFF216at 237.530 kb on + strand, within GFF216at 237.530 kb on + strand, within GFF216at 237.530 kb on + strand, within GFF216at 237.530 kb on + strand, within GFF216at 237.530 kb on + strand, within GFF216at 237.531 kb on - strand, within GFF216at 237.863 kb on + strand, within GFF216at 237.939 kb on - strand, within GFF216at 237.939 kb on - strand, within GFF216at 237.939 kb on - strand, within GFF216at 237.939 kb on - strand, within GFF216at 238.016 kb on + strand, within GFF216at 238.016 kb on + strand, within GFF216at 238.016 kb on + strand, within GFF216at 238.016 kb on + strand, within GFF216at 238.017 kb on - strand, within GFF216at 238.017 kb on - strand, within GFF216at 238.017 kb on - strand, within GFF216at 238.017 kb on - strand, within GFF216at 238.271 kb on + strandat 238.289 kb on + strandat 238.289 kb on + strandat 238.290 kb on - strandat 238.454 kb on + strandat 238.454 kb on + strandat 238.454 kb on + strandat 238.455 kb on - strandat 238.472 kb on + strandat 238.473 kb on - strandat 238.505 kb on + strandat 238.506 kb on - strandat 238.614 kb on - strand, within GFF217at 238.614 kb on - strand, within GFF217at 238.668 kb on - strand, within GFF217at 238.668 kb on - strand, within GFF217at 239.210 kb on + strand, within GFF217

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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236,421 - GFF215 0.57 -0.1
236,421 - GFF215 0.57 -0.8
236,513 + GFF215 0.62 -0.6
236,513 + GFF215 0.62 +0.1
236,546 + GFF215 0.64 -0.7
236,546 + GFF215 0.64 +0.3
236,546 + GFF215 0.64 -0.1
236,547 - GFF215 0.64 +0.5
236,547 - GFF215 0.64 -0.1
236,547 - GFF215 0.64 -0.1
236,555 + GFF215 0.64 +1.1
236,556 - GFF215 0.64 -0.1
236,780 + GFF215 0.76 -0.3
236,781 - GFF215 0.76 +1.0
236,781 - GFF215 0.76 -0.4
236,781 - GFF215 0.76 -0.2
236,781 - GFF215 0.76 +0.1
236,916 - GFF215 0.83 -0.1
237,014 + GFF215 0.88 -0.1
237,270 - -0.5
237,316 + -1.8
237,359 + +0.2
237,359 + +0.3
237,360 - -0.3
237,360 - -0.8
237,395 + +0.3
237,395 + +0.9
237,395 + -1.4
237,396 - -0.6
237,396 - -1.4
237,396 - +0.3
237,396 - +0.8
237,401 + -0.0
237,401 + -0.1
237,401 + +0.3
237,401 + +0.4
237,401 + -1.5
237,401 + -0.4
237,401 + -0.2
237,401 + -0.2
237,401 + -0.0
237,401 + -0.3
237,401 + -0.4
237,402 - +0.1
237,402 - -1.2
237,402 - -0.3
237,402 - +0.1
237,402 - +0.2
237,402 - -1.3
237,402 - +1.0
237,402 - +0.8
237,402 - -2.2
237,402 - -0.2
237,402 - +0.4
237,402 - +1.1
237,402 - +0.4
237,402 - -0.1
237,402 - -0.2
237,410 + -0.2
237,410 + +0.3
237,410 + -0.2
237,410 + -0.1
237,411 - +1.8
237,530 + GFF216 0.18 +0.7
237,530 + GFF216 0.18 -0.5
237,530 + GFF216 0.18 -0.9
237,530 + GFF216 0.18 +1.0
237,530 + GFF216 0.18 +0.9
237,530 + GFF216 0.18 -2.3
237,531 - GFF216 0.18 -0.4
237,863 + GFF216 0.51 -0.1
237,939 - GFF216 0.58 -0.9
237,939 - GFF216 0.58 +0.7
237,939 - GFF216 0.58 -0.1
237,939 - GFF216 0.58 -0.6
238,016 + GFF216 0.66 +0.5
238,016 + GFF216 0.66 +1.2
238,016 + GFF216 0.66 -0.2
238,016 + GFF216 0.66 +0.5
238,017 - GFF216 0.66 +0.4
238,017 - GFF216 0.66 -0.5
238,017 - GFF216 0.66 +0.2
238,017 - GFF216 0.66 +0.3
238,271 + +1.4
238,289 + +0.7
238,289 + +0.0
238,290 - -0.1
238,454 + +0.2
238,454 + -0.4
238,454 + +0.1
238,455 - -0.0
238,472 + +0.2
238,473 - +0.7
238,505 + -0.6
238,506 - -1.0
238,614 - GFF217 0.17 -0.1
238,614 - GFF217 0.17 +0.3
238,668 - GFF217 0.21 +0.0
238,668 - GFF217 0.21 -1.2
239,210 + GFF217 0.61 -0.3

Or see this region's nucleotide sequence