Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2065 and GFF2066 overlap by 1 nucleotides GFF2066 and GFF2067 are separated by 58 nucleotides GFF2067 and GFF2068 are separated by 240 nucleotides
GFF2065 - Malate dehydrogenase (EC 1.1.1.37), at 947,165 to 948,247
GFF2065
GFF2066 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 948,247 to 951,735
GFF2066
GFF2067 - hypothetical protein, at 951,794 to 952,081
GFF2067
GFF2068 - Regulatory protein, LuxR:Tetratricopeptide TPR_4, at 952,322 to 955,021
GFF2068
Position (kb) 948
949
950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 947.650 kb on - strand, within GFF2065 at 948.064 kb on - strand, within GFF2065 at 948.064 kb on - strand, within GFF2065 at 948.064 kb on - strand, within GFF2065 at 948.398 kb on + strand at 948.399 kb on - strand at 948.399 kb on - strand at 948.399 kb on - strand at 948.647 kb on + strand, within GFF2066 at 948.699 kb on - strand, within GFF2066 at 948.747 kb on - strand, within GFF2066 at 948.830 kb on + strand, within GFF2066 at 948.830 kb on + strand, within GFF2066 at 948.831 kb on - strand, within GFF2066 at 949.449 kb on - strand, within GFF2066 at 949.449 kb on - strand, within GFF2066 at 949.913 kb on + strand, within GFF2066 at 949.938 kb on - strand, within GFF2066 at 950.018 kb on + strand, within GFF2066 at 950.019 kb on - strand, within GFF2066 at 950.159 kb on + strand, within GFF2066 at 950.159 kb on + strand, within GFF2066 at 950.159 kb on + strand, within GFF2066 at 950.160 kb on - strand, within GFF2066 at 950.219 kb on + strand, within GFF2066 at 950.219 kb on + strand, within GFF2066 at 950.220 kb on - strand, within GFF2066 at 950.603 kb on + strand, within GFF2066 at 950.603 kb on + strand, within GFF2066 at 950.604 kb on - strand, within GFF2066 at 950.834 kb on + strand, within GFF2066 at 950.858 kb on + strand, within GFF2066 at 950.939 kb on + strand, within GFF2066 at 950.940 kb on - strand, within GFF2066 at 950.969 kb on + strand, within GFF2066 at 950.970 kb on - strand, within GFF2066 at 950.970 kb on - strand, within GFF2066 at 951.177 kb on - strand, within GFF2066 at 951.206 kb on + strand, within GFF2066 at 951.249 kb on - strand, within GFF2066 at 951.434 kb on + strand at 951.434 kb on + strand at 951.435 kb on - strand at 951.566 kb on + strand at 951.567 kb on - strand at 951.578 kb on + strand at 951.579 kb on - strand at 951.579 kb on - strand at 951.579 kb on - strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.687 kb on - strand at 951.687 kb on - strand at 951.847 kb on - strand, within GFF2067 at 951.897 kb on + strand, within GFF2067 at 951.898 kb on - strand, within GFF2067 at 952.132 kb on + strand at 952.197 kb on + strand at 952.197 kb on + strand at 952.198 kb on - strand at 952.272 kb on - strand at 952.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 947,650 - GFF2065 0.45 +0.3 948,064 - GFF2065 0.83 -0.4 948,064 - GFF2065 0.83 +0.0 948,064 - GFF2065 0.83 -1.0 948,398 + -0.5 948,399 - +0.3 948,399 - +1.4 948,399 - -0.1 948,647 + GFF2066 0.11 +1.2 948,699 - GFF2066 0.13 -1.8 948,747 - GFF2066 0.14 +1.2 948,830 + GFF2066 0.17 +0.0 948,830 + GFF2066 0.17 +0.1 948,831 - GFF2066 0.17 +0.3 949,449 - GFF2066 0.34 -0.3 949,449 - GFF2066 0.34 -0.2 949,913 + GFF2066 0.48 +0.5 949,938 - GFF2066 0.48 -0.1 950,018 + GFF2066 0.51 +1.3 950,019 - GFF2066 0.51 +0.5 950,159 + GFF2066 0.55 -0.3 950,159 + GFF2066 0.55 +0.3 950,159 + GFF2066 0.55 -0.5 950,160 - GFF2066 0.55 +0.7 950,219 + GFF2066 0.57 -0.7 950,219 + GFF2066 0.57 -0.2 950,220 - GFF2066 0.57 -0.2 950,603 + GFF2066 0.68 -0.3 950,603 + GFF2066 0.68 -0.8 950,604 - GFF2066 0.68 +1.0 950,834 + GFF2066 0.74 +0.0 950,858 + GFF2066 0.75 -1.5 950,939 + GFF2066 0.77 +1.2 950,940 - GFF2066 0.77 -1.1 950,969 + GFF2066 0.78 +0.3 950,970 - GFF2066 0.78 +0.4 950,970 - GFF2066 0.78 -0.5 951,177 - GFF2066 0.84 +3.1 951,206 + GFF2066 0.85 -0.7 951,249 - GFF2066 0.86 -0.0 951,434 + +0.7 951,434 + +0.3 951,435 - -0.2 951,566 + +0.3 951,567 - -0.2 951,578 + +0.1 951,579 - +0.8 951,579 - +0.3 951,579 - +0.4 951,686 + -0.1 951,686 + -0.7 951,686 + -0.7 951,686 + -0.3 951,686 + -0.2 951,687 - +2.7 951,687 - -0.1 951,847 - GFF2067 0.18 +0.9 951,897 + GFF2067 0.36 -0.7 951,898 - GFF2067 0.36 +0.7 952,132 + +0.4 952,197 + +0.7 952,197 + -0.1 952,198 - -0.1 952,272 - +1.5 952,577 + +0.8
Or see this region's nucleotide sequence