Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF202

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF201 and GFF202 overlap by 4 nucleotidesGFF202 and GFF203 overlap by 4 nucleotides GFF201 - hypothetical protein, at 216,011 to 217,081 GFF201 GFF202 - Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4), at 217,078 to 219,393 GFF202 GFF203 - Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4), at 219,390 to 220,901 GFF203 Position (kb) 217 218 219 220Strain fitness (log2 ratio) -1 0 1 2at 216.482 kb on + strand, within GFF201at 216.482 kb on + strand, within GFF201at 216.512 kb on + strand, within GFF201at 217.593 kb on - strand, within GFF202at 217.984 kb on + strand, within GFF202at 218.213 kb on + strand, within GFF202at 220.289 kb on - strand, within GFF203

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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216,482 + GFF201 0.44 -0.8
216,482 + GFF201 0.44 -0.2
216,512 + GFF201 0.47 +0.2
217,593 - GFF202 0.22 +2.1
217,984 + GFF202 0.39 +0.1
218,213 + GFF202 0.49 -0.3
220,289 - GFF203 0.59 +0.1

Or see this region's nucleotide sequence