Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF177

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF175 and GFF176 are separated by 8 nucleotidesGFF176 and GFF177 are separated by 24 nucleotidesGFF177 and GFF178 overlap by 14 nucleotidesGFF178 and GFF179 are separated by 7 nucleotides GFF175 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 189,129 to 190,142 GFF175 GFF176 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 190,151 to 191,107 GFF176 GFF177 - Demethylmenaquinone methyltransferase, at 191,132 to 191,791 GFF177 GFF178 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 191,778 to 192,737 GFF178 GFF179 - Small-conductance mechanosensitive channel, at 192,745 to 193,320 GFF179 Position (kb) 191 192Strain fitness (log2 ratio) -1 0 1at 190.884 kb on - strand, within GFF176at 191.006 kb on + strand, within GFF176at 191.526 kb on - strand, within GFF177at 191.526 kb on - strand, within GFF177at 191.778 kb on - strandat 191.884 kb on - strand, within GFF178at 191.884 kb on - strand, within GFF178at 191.956 kb on - strand, within GFF178at 192.634 kb on - strand, within GFF178

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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190,884 - GFF176 0.77 -0.2
191,006 + GFF176 0.89 +0.0
191,526 - GFF177 0.60 -0.8
191,526 - GFF177 0.60 -0.7
191,778 - -1.3
191,884 - GFF178 0.11 -0.3
191,884 - GFF178 0.11 +0.0
191,956 - GFF178 0.19 -0.4
192,634 - GFF178 0.89 -0.7

Or see this region's nucleotide sequence