Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1721

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1720 and GFF1721 are separated by 325 nucleotidesGFF1721 and GFF1722 are separated by 21 nucleotidesGFF1722 and GFF1723 are separated by 11 nucleotides GFF1720 - Trk system potassium uptake protein TrkA, at 576,501 to 577,892 GFF1720 GFF1721 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 578,218 to 579,348 GFF1721 GFF1722 - Short-chain dehydrogenase/reductase SDR, at 579,370 to 580,038 GFF1722 GFF1723 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 580,050 to 581,234 GFF1723 Position (kb) 578 579 580Strain fitness (log2 ratio) -2 -1 0 1 2at 577.330 kb on + strand, within GFF1720at 577.497 kb on + strand, within GFF1720at 577.498 kb on - strand, within GFF1720at 577.501 kb on + strand, within GFF1720at 577.501 kb on + strand, within GFF1720at 577.501 kb on + strand, within GFF1720at 577.502 kb on - strand, within GFF1720at 577.502 kb on - strand, within GFF1720at 577.502 kb on - strand, within GFF1720at 577.814 kb on + strandat 577.815 kb on - strandat 577.815 kb on - strandat 577.906 kb on + strandat 577.906 kb on + strandat 577.906 kb on + strandat 577.906 kb on + strandat 577.907 kb on - strandat 577.907 kb on - strandat 577.943 kb on + strandat 577.943 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.270 kb on + strandat 578.271 kb on - strandat 578.271 kb on - strandat 578.271 kb on - strandat 578.271 kb on - strandat 578.271 kb on - strandat 578.297 kb on + strandat 578.297 kb on + strandat 578.297 kb on + strandat 578.298 kb on - strandat 578.298 kb on - strandat 578.298 kb on - strandat 578.327 kb on + strandat 578.327 kb on + strandat 578.327 kb on + strandat 578.327 kb on + strandat 578.327 kb on + strandat 578.327 kb on + strandat 578.328 kb on - strandat 578.328 kb on - strandat 578.328 kb on - strandat 578.328 kb on - strandat 578.328 kb on - strandat 578.328 kb on - strandat 578.333 kb on + strand, within GFF1721at 578.565 kb on - strand, within GFF1721at 578.565 kb on - strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.778 kb on - strand, within GFF1721at 578.778 kb on - strand, within GFF1721at 578.778 kb on - strand, within GFF1721at 578.912 kb on + strand, within GFF1721at 578.912 kb on + strand, within GFF1721at 578.912 kb on + strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 579.054 kb on - strand, within GFF1721at 579.158 kb on + strand, within GFF1721at 579.158 kb on + strand, within GFF1721at 579.158 kb on + strand, within GFF1721at 579.159 kb on - strand, within GFF1721at 579.159 kb on - strand, within GFF1721at 579.159 kb on - strand, within GFF1721at 579.159 kb on - strand, within GFF1721at 579.203 kb on + strand, within GFF1721at 579.204 kb on - strand, within GFF1721at 579.204 kb on - strand, within GFF1721at 579.204 kb on - strand, within GFF1721at 579.351 kb on - strandat 579.551 kb on + strand, within GFF1722at 579.551 kb on + strand, within GFF1722at 579.552 kb on - strand, within GFF1722at 579.605 kb on + strand, within GFF1722at 579.812 kb on + strand, within GFF1722at 579.812 kb on + strand, within GFF1722at 579.812 kb on + strand, within GFF1722at 579.812 kb on + strand, within GFF1722at 579.812 kb on + strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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577,330 + GFF1720 0.60 -0.0
577,497 + GFF1720 0.72 +0.9
577,498 - GFF1720 0.72 -0.5
577,501 + GFF1720 0.72 +0.1
577,501 + GFF1720 0.72 +0.8
577,501 + GFF1720 0.72 +1.2
577,502 - GFF1720 0.72 +0.1
577,502 - GFF1720 0.72 -0.8
577,502 - GFF1720 0.72 +0.1
577,814 + -0.9
577,815 - -0.1
577,815 - -0.6
577,906 + +0.3
577,906 + -0.3
577,906 + +2.4
577,906 + -0.2
577,907 - -0.4
577,907 - -0.1
577,943 + +0.1
577,943 + -2.5
578,270 + -1.2
578,270 + +0.6
578,270 + -0.8
578,270 + -0.4
578,270 + -0.2
578,270 + -0.5
578,270 + +0.8
578,271 - -0.9
578,271 - -0.5
578,271 - +0.7
578,271 - +0.6
578,271 - +0.5
578,297 + +0.6
578,297 + +0.2
578,297 + -0.8
578,298 - -0.1
578,298 - +0.0
578,298 - -0.3
578,327 + -0.3
578,327 + +0.1
578,327 + -0.1
578,327 + -0.4
578,327 + -0.3
578,327 + -0.1
578,328 - -0.3
578,328 - -0.5
578,328 - -0.5
578,328 - -1.1
578,328 - +0.0
578,328 - +1.9
578,333 + GFF1721 0.10 +0.9
578,565 - GFF1721 0.31 -0.7
578,565 - GFF1721 0.31 +0.6
578,777 + GFF1721 0.49 +0.3
578,777 + GFF1721 0.49 -0.7
578,777 + GFF1721 0.49 +0.2
578,777 + GFF1721 0.49 +1.5
578,778 - GFF1721 0.50 -1.4
578,778 - GFF1721 0.50 +1.4
578,778 - GFF1721 0.50 -1.0
578,912 + GFF1721 0.61 -0.5
578,912 + GFF1721 0.61 -0.2
578,912 + GFF1721 0.61 -0.2
578,913 - GFF1721 0.61 +0.1
578,913 - GFF1721 0.61 +0.3
578,913 - GFF1721 0.61 +2.0
578,913 - GFF1721 0.61 +0.5
578,913 - GFF1721 0.61 +1.5
578,913 - GFF1721 0.61 +0.5
578,913 - GFF1721 0.61 +0.2
578,913 - GFF1721 0.61 +0.3
579,054 - GFF1721 0.74 +0.1
579,158 + GFF1721 0.83 +0.6
579,158 + GFF1721 0.83 -0.2
579,158 + GFF1721 0.83 +0.2
579,159 - GFF1721 0.83 +0.0
579,159 - GFF1721 0.83 -0.1
579,159 - GFF1721 0.83 +0.7
579,159 - GFF1721 0.83 +1.1
579,203 + GFF1721 0.87 -0.3
579,204 - GFF1721 0.87 -1.5
579,204 - GFF1721 0.87 -0.5
579,204 - GFF1721 0.87 +1.7
579,351 - +2.3
579,551 + GFF1722 0.27 -0.6
579,551 + GFF1722 0.27 +0.1
579,552 - GFF1722 0.27 -0.3
579,605 + GFF1722 0.35 -0.7
579,812 + GFF1722 0.66 +0.5
579,812 + GFF1722 0.66 -0.2
579,812 + GFF1722 0.66 -0.6
579,812 + GFF1722 0.66 -0.4
579,812 + GFF1722 0.66 +0.8
579,813 - GFF1722 0.66 +0.5
579,813 - GFF1722 0.66 -2.3
579,813 - GFF1722 0.66 +1.2
579,813 - GFF1722 0.66 -0.0
579,813 - GFF1722 0.66 +0.3
579,813 - GFF1722 0.66 -0.6
579,813 - GFF1722 0.66 +0.7
579,813 - GFF1722 0.66 -0.4

Or see this region's nucleotide sequence