Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1711 and GFF1712 are separated by 8 nucleotides GFF1712 and GFF1713 are separated by 17 nucleotides GFF1713 and GFF1714 are separated by 2 nucleotides
GFF1711 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 565,860 to 567,878
GFF1711
GFF1712 - Probable transmembrane protein, at 567,887 to 568,507
GFF1712
GFF1713 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18), at 568,525 to 569,316
GFF1713
GFF1714 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 569,319 to 570,455
GFF1714
Position (kb) 567
568
569 Strain fitness (log2 ratio) -1
0
1
2
3 at 567.001 kb on + strand, within GFF1711 at 567.001 kb on + strand, within GFF1711 at 567.002 kb on - strand, within GFF1711 at 567.002 kb on - strand, within GFF1711 at 567.028 kb on + strand, within GFF1711 at 567.028 kb on + strand, within GFF1711 at 567.029 kb on - strand, within GFF1711 at 567.029 kb on - strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.076 kb on + strand, within GFF1711 at 567.077 kb on - strand, within GFF1711 at 567.077 kb on - strand, within GFF1711 at 567.077 kb on - strand, within GFF1711 at 567.211 kb on + strand, within GFF1711 at 567.211 kb on + strand, within GFF1711 at 567.212 kb on - strand, within GFF1711 at 567.212 kb on - strand, within GFF1711 at 567.212 kb on - strand, within GFF1711 at 567.274 kb on + strand, within GFF1711 at 567.274 kb on + strand, within GFF1711 at 567.274 kb on + strand, within GFF1711 at 567.275 kb on - strand, within GFF1711 at 567.700 kb on + strand at 567.700 kb on + strand at 567.701 kb on - strand at 567.701 kb on - strand at 567.701 kb on - strand at 567.701 kb on - strand at 567.785 kb on - strand at 567.785 kb on - strand at 567.785 kb on - strand at 567.888 kb on + strand at 567.889 kb on - strand at 567.889 kb on - strand at 567.889 kb on - strand at 567.889 kb on - strand at 568.422 kb on + strand, within GFF1712 at 568.422 kb on + strand, within GFF1712 at 568.422 kb on + strand, within GFF1712 at 568.423 kb on - strand, within GFF1712 at 568.423 kb on - strand, within GFF1712 at 568.423 kb on - strand, within GFF1712 at 568.423 kb on - strand, within GFF1712 at 568.423 kb on - strand, within GFF1712 at 568.832 kb on + strand, within GFF1713 at 568.832 kb on + strand, within GFF1713 at 568.832 kb on + strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.833 kb on - strand, within GFF1713 at 568.872 kb on - strand, within GFF1713 at 568.872 kb on - strand, within GFF1713 at 568.872 kb on - strand, within GFF1713 at 568.872 kb on - strand, within GFF1713 at 568.872 kb on - strand, within GFF1713 at 568.985 kb on + strand, within GFF1713 at 568.985 kb on + strand, within GFF1713 at 568.985 kb on + strand, within GFF1713 at 568.986 kb on - strand, within GFF1713 at 568.986 kb on - strand, within GFF1713 at 569.090 kb on + strand, within GFF1713 at 569.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 567,001 + GFF1711 0.57 +0.6 567,001 + GFF1711 0.57 -0.1 567,002 - GFF1711 0.57 -0.1 567,002 - GFF1711 0.57 +0.6 567,028 + GFF1711 0.58 +1.2 567,028 + GFF1711 0.58 +0.2 567,029 - GFF1711 0.58 -0.3 567,029 - GFF1711 0.58 +2.0 567,076 + GFF1711 0.60 +1.2 567,076 + GFF1711 0.60 +2.8 567,076 + GFF1711 0.60 -0.3 567,076 + GFF1711 0.60 +2.6 567,076 + GFF1711 0.60 -0.1 567,076 + GFF1711 0.60 +0.4 567,076 + GFF1711 0.60 +0.1 567,076 + GFF1711 0.60 +2.0 567,076 + GFF1711 0.60 +0.4 567,076 + GFF1711 0.60 +1.3 567,077 - GFF1711 0.60 +1.2 567,077 - GFF1711 0.60 +0.5 567,077 - GFF1711 0.60 +1.2 567,211 + GFF1711 0.67 +0.9 567,211 + GFF1711 0.67 +1.0 567,212 - GFF1711 0.67 +0.3 567,212 - GFF1711 0.67 +0.9 567,212 - GFF1711 0.67 +1.3 567,274 + GFF1711 0.70 +0.5 567,274 + GFF1711 0.70 +2.0 567,274 + GFF1711 0.70 +0.2 567,275 - GFF1711 0.70 +0.8 567,700 + +0.6 567,700 + +1.4 567,701 - +2.2 567,701 - +1.1 567,701 - +0.1 567,701 - +0.4 567,785 - +1.2 567,785 - +1.0 567,785 - +1.2 567,888 + +0.6 567,889 - +0.0 567,889 - -1.2 567,889 - -0.1 567,889 - -0.6 568,422 + GFF1712 0.86 -0.3 568,422 + GFF1712 0.86 +0.3 568,422 + GFF1712 0.86 +0.2 568,423 - GFF1712 0.86 +1.0 568,423 - GFF1712 0.86 +0.4 568,423 - GFF1712 0.86 +0.1 568,423 - GFF1712 0.86 +0.1 568,423 - GFF1712 0.86 +0.2 568,832 + GFF1713 0.39 +0.2 568,832 + GFF1713 0.39 +0.7 568,832 + GFF1713 0.39 +1.2 568,833 - GFF1713 0.39 -1.1 568,833 - GFF1713 0.39 -0.4 568,833 - GFF1713 0.39 +2.1 568,833 - GFF1713 0.39 -0.7 568,833 - GFF1713 0.39 -0.4 568,833 - GFF1713 0.39 -0.7 568,872 - GFF1713 0.44 +0.7 568,872 - GFF1713 0.44 -0.0 568,872 - GFF1713 0.44 -0.4 568,872 - GFF1713 0.44 -0.0 568,872 - GFF1713 0.44 -0.2 568,985 + GFF1713 0.58 -0.2 568,985 + GFF1713 0.58 -0.7 568,985 + GFF1713 0.58 +0.1 568,986 - GFF1713 0.58 +1.1 568,986 - GFF1713 0.58 -0.1 569,090 + GFF1713 0.71 +0.5 569,324 - -0.7
Or see this region's nucleotide sequence