Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1634 and GFF1635 are separated by 84 nucleotides GFF1635 and GFF1636 are separated by 12 nucleotides GFF1636 and GFF1637 are separated by 249 nucleotides
GFF1634 - probable two-component sensor kinase, at 489,081 to 491,009
GFF1634
GFF1635 - DNA-binding response regulator, at 491,094 to 491,804
GFF1635
GFF1636 - LysR-family transcriptional regulator, at 491,817 to 492,794
GFF1636
GFF1637 - ABC transporter substrate-binding protein, at 493,044 to 493,901
GFF1637
Position (kb) 491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2 at 490.909 kb on + strand at 491.109 kb on + strand at 491.109 kb on + strand at 491.109 kb on + strand at 491.110 kb on - strand at 491.301 kb on + strand, within GFF1635 at 491.301 kb on + strand, within GFF1635 at 491.302 kb on - strand, within GFF1635 at 491.400 kb on + strand, within GFF1635 at 491.401 kb on - strand, within GFF1635 at 491.778 kb on + strand at 491.778 kb on + strand at 492.010 kb on + strand, within GFF1636 at 492.125 kb on - strand, within GFF1636 at 492.125 kb on - strand, within GFF1636 at 492.863 kb on - strand at 492.892 kb on - strand at 492.916 kb on + strand at 492.923 kb on + strand at 492.923 kb on + strand at 492.923 kb on + strand at 492.924 kb on - strand at 492.925 kb on + strand at 492.925 kb on + strand at 492.926 kb on - strand at 492.926 kb on - strand at 492.926 kb on - strand at 492.936 kb on + strand at 492.938 kb on + strand at 492.938 kb on + strand at 492.938 kb on + strand at 492.939 kb on - strand at 492.983 kb on + strand at 492.983 kb on + strand at 492.983 kb on + strand at 492.983 kb on + strand at 492.984 kb on - strand at 492.984 kb on - strand at 492.984 kb on - strand at 493.224 kb on + strand, within GFF1637 at 493.225 kb on - strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.414 kb on - strand, within GFF1637 at 493.414 kb on - strand, within GFF1637 at 493.414 kb on - strand, within GFF1637 at 493.414 kb on - strand, within GFF1637 at 493.426 kb on - strand, within GFF1637 at 493.530 kb on + strand, within GFF1637 at 493.530 kb on + strand, within GFF1637 at 493.530 kb on + strand, within GFF1637 at 493.530 kb on + strand, within GFF1637 at 493.531 kb on - strand, within GFF1637 at 493.674 kb on + strand, within GFF1637 at 493.674 kb on + strand, within GFF1637 at 493.689 kb on + strand, within GFF1637 at 493.689 kb on + strand, within GFF1637 at 493.689 kb on + strand, within GFF1637 at 493.690 kb on - strand, within GFF1637 at 493.690 kb on - strand, within GFF1637 at 493.690 kb on - strand, within GFF1637 at 493.690 kb on - strand, within GFF1637
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 490,909 + -0.2 491,109 + -0.2 491,109 + +0.9 491,109 + +0.1 491,110 - +0.3 491,301 + GFF1635 0.29 +0.2 491,301 + GFF1635 0.29 +1.0 491,302 - GFF1635 0.29 +0.0 491,400 + GFF1635 0.43 -0.4 491,401 - GFF1635 0.43 -0.4 491,778 + -0.0 491,778 + -1.4 492,010 + GFF1636 0.20 +0.7 492,125 - GFF1636 0.31 +2.4 492,125 - GFF1636 0.31 -0.2 492,863 - -0.4 492,892 - +1.8 492,916 + -0.7 492,923 + -0.9 492,923 + -0.1 492,923 + +1.1 492,924 - -0.7 492,925 + -0.5 492,925 + -0.8 492,926 - -0.7 492,926 - +1.0 492,926 - -0.7 492,936 + -0.5 492,938 + +2.3 492,938 + -0.9 492,938 + +0.4 492,939 - -2.4 492,983 + +0.1 492,983 + +0.9 492,983 + +1.4 492,983 + +1.2 492,984 - +0.1 492,984 - -1.2 492,984 - -0.1 493,224 + GFF1637 0.21 +0.1 493,225 - GFF1637 0.21 -0.4 493,413 + GFF1637 0.43 +0.5 493,413 + GFF1637 0.43 +1.4 493,413 + GFF1637 0.43 +1.1 493,413 + GFF1637 0.43 -0.2 493,413 + GFF1637 0.43 +0.0 493,413 + GFF1637 0.43 -0.6 493,414 - GFF1637 0.43 +0.8 493,414 - GFF1637 0.43 -1.5 493,414 - GFF1637 0.43 +2.5 493,414 - GFF1637 0.43 -0.5 493,426 - GFF1637 0.45 +0.6 493,530 + GFF1637 0.57 -0.2 493,530 + GFF1637 0.57 -0.6 493,530 + GFF1637 0.57 -0.8 493,530 + GFF1637 0.57 +1.0 493,531 - GFF1637 0.57 +1.2 493,674 + GFF1637 0.73 -0.6 493,674 + GFF1637 0.73 +0.3 493,689 + GFF1637 0.75 -0.5 493,689 + GFF1637 0.75 -0.9 493,689 + GFF1637 0.75 +1.5 493,690 - GFF1637 0.75 -1.3 493,690 - GFF1637 0.75 -0.2 493,690 - GFF1637 0.75 -0.7 493,690 - GFF1637 0.75 +0.4
Or see this region's nucleotide sequence