Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1633 and GFF1634 are separated by 119 nucleotides GFF1634 and GFF1635 are separated by 84 nucleotides GFF1635 and GFF1636 are separated by 12 nucleotides
GFF1633 - putative autotransporter protein, at 486,406 to 488,961
GFF1633
GFF1634 - probable two-component sensor kinase, at 489,081 to 491,009
GFF1634
GFF1635 - DNA-binding response regulator, at 491,094 to 491,804
GFF1635
GFF1636 - LysR-family transcriptional regulator, at 491,817 to 492,794
GFF1636
Position (kb) 489
490
491
492 Strain fitness (log2 ratio) -1
0
1
2 at 488.306 kb on + strand, within GFF1633 at 488.307 kb on - strand, within GFF1633 at 488.307 kb on - strand, within GFF1633 at 488.540 kb on + strand, within GFF1633 at 488.540 kb on + strand, within GFF1633 at 488.555 kb on + strand, within GFF1633 at 488.555 kb on + strand, within GFF1633 at 488.556 kb on - strand, within GFF1633 at 488.556 kb on - strand, within GFF1633 at 488.594 kb on + strand, within GFF1633 at 488.708 kb on + strand at 488.708 kb on + strand at 488.708 kb on + strand at 488.708 kb on + strand at 488.708 kb on + strand at 488.709 kb on - strand at 488.709 kb on - strand at 489.248 kb on - strand at 489.248 kb on - strand at 489.435 kb on + strand, within GFF1634 at 489.964 kb on + strand, within GFF1634 at 489.976 kb on + strand, within GFF1634 at 489.976 kb on + strand, within GFF1634 at 489.977 kb on - strand, within GFF1634 at 489.982 kb on + strand, within GFF1634 at 489.983 kb on - strand, within GFF1634 at 490.399 kb on + strand, within GFF1634 at 490.399 kb on + strand, within GFF1634 at 490.418 kb on - strand, within GFF1634 at 490.418 kb on - strand, within GFF1634 at 490.528 kb on + strand, within GFF1634 at 490.529 kb on - strand, within GFF1634 at 490.529 kb on - strand, within GFF1634 at 490.909 kb on + strand at 491.109 kb on + strand at 491.109 kb on + strand at 491.109 kb on + strand at 491.110 kb on - strand at 491.301 kb on + strand, within GFF1635 at 491.301 kb on + strand, within GFF1635 at 491.302 kb on - strand, within GFF1635 at 491.400 kb on + strand, within GFF1635 at 491.401 kb on - strand, within GFF1635 at 491.778 kb on + strand at 491.778 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 488,306 + GFF1633 0.74 +0.4 488,307 - GFF1633 0.74 +0.4 488,307 - GFF1633 0.74 -1.2 488,540 + GFF1633 0.83 -1.2 488,540 + GFF1633 0.83 +0.4 488,555 + GFF1633 0.84 -0.5 488,555 + GFF1633 0.84 +0.1 488,556 - GFF1633 0.84 +0.3 488,556 - GFF1633 0.84 -0.3 488,594 + GFF1633 0.86 +0.8 488,708 + +0.5 488,708 + -0.1 488,708 + -1.1 488,708 + -0.7 488,708 + +0.7 488,709 - -0.0 488,709 - -1.2 489,248 - -0.0 489,248 - -0.0 489,435 + GFF1634 0.18 +1.1 489,964 + GFF1634 0.46 -0.5 489,976 + GFF1634 0.46 +1.9 489,976 + GFF1634 0.46 +0.6 489,977 - GFF1634 0.46 -0.7 489,982 + GFF1634 0.47 +1.5 489,983 - GFF1634 0.47 +0.8 490,399 + GFF1634 0.68 +1.0 490,399 + GFF1634 0.68 +0.2 490,418 - GFF1634 0.69 +0.5 490,418 - GFF1634 0.69 +0.2 490,528 + GFF1634 0.75 -1.5 490,529 - GFF1634 0.75 -0.7 490,529 - GFF1634 0.75 +1.8 490,909 + -0.2 491,109 + -0.2 491,109 + +0.9 491,109 + +0.1 491,110 - +0.3 491,301 + GFF1635 0.29 +0.2 491,301 + GFF1635 0.29 +1.0 491,302 - GFF1635 0.29 +0.0 491,400 + GFF1635 0.43 -0.4 491,401 - GFF1635 0.43 -0.4 491,778 + -0.0 491,778 + -1.4
Or see this region's nucleotide sequence