Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1621 and GFF1622 are separated by 104 nucleotides GFF1622 and GFF1623 overlap by 4 nucleotides GFF1623 and GFF1624 overlap by 1 nucleotides
GFF1621 - tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25), at 475,248 to 476,510
GFF1621
GFF1622 - Trehalose-6-phosphate phosphatase (EC 3.1.3.12), at 476,615 to 477,358
GFF1622
GFF1623 - Glucoamylase (EC 3.2.1.3), at 477,355 to 479,169
GFF1623
GFF1624 - Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15), at 479,169 to 480,551
GFF1624
Position (kb) 477
478
479
480 Strain fitness (log2 ratio) -1
0
1
2 at 476.565 kb on - strand at 476.602 kb on - strand at 476.602 kb on - strand at 477.254 kb on + strand, within GFF1622 at 477.652 kb on + strand, within GFF1623 at 477.994 kb on + strand, within GFF1623 at 478.084 kb on + strand, within GFF1623 at 478.085 kb on - strand, within GFF1623 at 478.243 kb on + strand, within GFF1623 at 478.243 kb on + strand, within GFF1623 at 478.243 kb on + strand, within GFF1623 at 478.244 kb on - strand, within GFF1623 at 478.244 kb on - strand, within GFF1623 at 478.244 kb on - strand, within GFF1623 at 478.244 kb on - strand, within GFF1623 at 478.424 kb on - strand, within GFF1623 at 478.424 kb on - strand, within GFF1623 at 478.540 kb on + strand, within GFF1623 at 478.541 kb on - strand, within GFF1623 at 478.541 kb on - strand, within GFF1623 at 478.541 kb on - strand, within GFF1623 at 478.678 kb on + strand, within GFF1623 at 479.105 kb on - strand at 479.400 kb on + strand, within GFF1624 at 479.400 kb on + strand, within GFF1624 at 479.400 kb on + strand, within GFF1624 at 479.400 kb on + strand, within GFF1624 at 479.400 kb on + strand, within GFF1624 at 479.401 kb on - strand, within GFF1624 at 479.403 kb on + strand, within GFF1624 at 479.403 kb on + strand, within GFF1624 at 479.403 kb on + strand, within GFF1624 at 479.404 kb on - strand, within GFF1624 at 479.478 kb on + strand, within GFF1624 at 479.478 kb on + strand, within GFF1624 at 479.568 kb on + strand, within GFF1624 at 479.569 kb on - strand, within GFF1624 at 479.763 kb on + strand, within GFF1624 at 479.764 kb on - strand, within GFF1624 at 479.931 kb on + strand, within GFF1624 at 479.931 kb on + strand, within GFF1624 at 479.973 kb on + strand, within GFF1624 at 479.974 kb on - strand, within GFF1624 at 479.974 kb on - strand, within GFF1624
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 476,565 - +0.8 476,602 - +1.7 476,602 - -0.6 477,254 + GFF1622 0.86 +0.6 477,652 + GFF1623 0.16 +0.2 477,994 + GFF1623 0.35 +0.4 478,084 + GFF1623 0.40 +0.3 478,085 - GFF1623 0.40 -0.1 478,243 + GFF1623 0.49 -0.2 478,243 + GFF1623 0.49 -0.6 478,243 + GFF1623 0.49 -1.4 478,244 - GFF1623 0.49 -0.3 478,244 - GFF1623 0.49 -0.3 478,244 - GFF1623 0.49 +0.1 478,244 - GFF1623 0.49 -0.7 478,424 - GFF1623 0.59 +0.4 478,424 - GFF1623 0.59 +0.3 478,540 + GFF1623 0.65 -1.5 478,541 - GFF1623 0.65 +0.0 478,541 - GFF1623 0.65 +0.1 478,541 - GFF1623 0.65 +0.4 478,678 + GFF1623 0.73 +2.2 479,105 - +0.8 479,400 + GFF1624 0.17 -0.5 479,400 + GFF1624 0.17 +0.0 479,400 + GFF1624 0.17 +0.6 479,400 + GFF1624 0.17 -0.8 479,400 + GFF1624 0.17 +0.2 479,401 - GFF1624 0.17 -0.3 479,403 + GFF1624 0.17 -0.4 479,403 + GFF1624 0.17 -0.4 479,403 + GFF1624 0.17 -0.3 479,404 - GFF1624 0.17 -1.4 479,478 + GFF1624 0.22 +0.1 479,478 + GFF1624 0.22 +2.0 479,568 + GFF1624 0.29 +0.1 479,569 - GFF1624 0.29 +0.5 479,763 + GFF1624 0.43 +0.1 479,764 - GFF1624 0.43 -0.0 479,931 + GFF1624 0.55 -0.6 479,931 + GFF1624 0.55 +0.3 479,973 + GFF1624 0.58 +0.4 479,974 - GFF1624 0.58 -0.3 479,974 - GFF1624 0.58 -0.9
Or see this region's nucleotide sequence