Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1602 and GFF1603 are separated by 33 nucleotides GFF1603 and GFF1604 are separated by 4 nucleotides GFF1604 and GFF1605 overlap by 4 nucleotides
GFF1602 - Arsenic efflux pump protein, at 457,724 to 459,004
GFF1602
GFF1603 - Cyanate transport protein CynX, at 459,038 to 460,222
GFF1603
GFF1604 - Probable deaminase, at 460,227 to 460,691
GFF1604
GFF1605 - Ankyrin, at 460,688 to 461,344
GFF1605
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1 at 458.454 kb on + strand, within GFF1602 at 458.455 kb on - strand, within GFF1602 at 458.740 kb on - strand, within GFF1602 at 458.934 kb on + strand at 458.935 kb on - strand at 459.019 kb on - strand at 459.019 kb on - strand at 459.100 kb on - strand at 459.100 kb on - strand at 459.100 kb on - strand at 459.100 kb on - strand at 459.537 kb on + strand, within GFF1603 at 459.537 kb on + strand, within GFF1603 at 459.538 kb on - strand, within GFF1603 at 459.630 kb on + strand, within GFF1603 at 459.819 kb on + strand, within GFF1603 at 459.819 kb on + strand, within GFF1603 at 460.264 kb on + strand at 460.265 kb on - strand at 460.339 kb on + strand, within GFF1604 at 460.339 kb on + strand, within GFF1604 at 460.339 kb on + strand, within GFF1604 at 460.340 kb on - strand, within GFF1604 at 460.387 kb on + strand, within GFF1604 at 460.388 kb on - strand, within GFF1604 at 460.388 kb on - strand, within GFF1604 at 460.393 kb on + strand, within GFF1604 at 460.393 kb on + strand, within GFF1604 at 460.393 kb on + strand, within GFF1604 at 460.393 kb on + strand, within GFF1604 at 460.394 kb on - strand, within GFF1604 at 460.394 kb on - strand, within GFF1604 at 460.394 kb on - strand, within GFF1604 at 460.394 kb on - strand, within GFF1604 at 460.394 kb on - strand, within GFF1604 at 460.462 kb on + strand, within GFF1604 at 460.462 kb on + strand, within GFF1604 at 460.463 kb on - strand, within GFF1604 at 460.463 kb on - strand, within GFF1604 at 460.463 kb on - strand, within GFF1604 at 460.828 kb on - strand, within GFF1605 at 460.828 kb on - strand, within GFF1605 at 460.962 kb on - strand, within GFF1605 at 460.981 kb on - strand, within GFF1605 at 461.058 kb on + strand, within GFF1605 at 461.058 kb on + strand, within GFF1605 at 461.058 kb on + strand, within GFF1605 at 461.058 kb on + strand, within GFF1605 at 461.059 kb on - strand, within GFF1605 at 461.059 kb on - strand, within GFF1605 at 461.059 kb on - strand, within GFF1605 at 461.064 kb on + strand, within GFF1605 at 461.065 kb on - strand, within GFF1605 at 461.065 kb on - strand, within GFF1605 at 461.197 kb on - strand, within GFF1605
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 458,454 + GFF1602 0.57 +0.6 458,455 - GFF1602 0.57 -1.2 458,740 - GFF1602 0.79 +1.5 458,934 + -1.5 458,935 - +0.1 459,019 - +0.2 459,019 - +0.2 459,100 - +0.2 459,100 - -0.5 459,100 - +0.7 459,100 - -1.0 459,537 + GFF1603 0.42 +1.5 459,537 + GFF1603 0.42 +1.1 459,538 - GFF1603 0.42 +0.1 459,630 + GFF1603 0.50 +0.5 459,819 + GFF1603 0.66 +0.1 459,819 + GFF1603 0.66 -0.2 460,264 + -0.5 460,265 - -0.2 460,339 + GFF1604 0.24 -0.8 460,339 + GFF1604 0.24 +0.2 460,339 + GFF1604 0.24 +1.6 460,340 - GFF1604 0.24 -0.1 460,387 + GFF1604 0.34 +0.1 460,388 - GFF1604 0.35 -0.0 460,388 - GFF1604 0.35 -0.8 460,393 + GFF1604 0.36 -0.0 460,393 + GFF1604 0.36 +0.2 460,393 + GFF1604 0.36 -0.5 460,393 + GFF1604 0.36 +0.3 460,394 - GFF1604 0.36 +0.6 460,394 - GFF1604 0.36 +0.2 460,394 - GFF1604 0.36 +0.2 460,394 - GFF1604 0.36 -0.6 460,394 - GFF1604 0.36 -0.1 460,462 + GFF1604 0.51 -0.7 460,462 + GFF1604 0.51 +0.8 460,463 - GFF1604 0.51 -0.0 460,463 - GFF1604 0.51 -0.9 460,463 - GFF1604 0.51 +0.1 460,828 - GFF1605 0.21 -1.1 460,828 - GFF1605 0.21 -0.2 460,962 - GFF1605 0.42 -0.4 460,981 - GFF1605 0.45 -0.6 461,058 + GFF1605 0.56 -2.4 461,058 + GFF1605 0.56 +0.3 461,058 + GFF1605 0.56 +1.2 461,058 + GFF1605 0.56 -0.5 461,059 - GFF1605 0.56 +0.2 461,059 - GFF1605 0.56 +0.3 461,059 - GFF1605 0.56 -1.3 461,064 + GFF1605 0.57 +0.0 461,065 - GFF1605 0.57 +1.0 461,065 - GFF1605 0.57 -0.2 461,197 - GFF1605 0.77 -0.8
Or see this region's nucleotide sequence