Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1445

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1444 and GFF1445 are separated by 230 nucleotidesGFF1445 and GFF1446 are separated by 109 nucleotides GFF1444 - Flagellin protein flaA, at 299,455 to 300,600 GFF1444 GFF1445 - Flagellin protein flaA, at 300,831 to 302,003 GFF1445 GFF1446 - Flagellin protein FlaA, at 302,113 to 303,315 GFF1446 Position (kb) 300 301 302 303Strain fitness (log2 ratio) -2 -1 0 1at 300.826 kb on + strandat 300.826 kb on + strandat 300.831 kb on - strandat 302.642 kb on - strand, within GFF1446at 302.867 kb on - strand, within GFF1446at 302.893 kb on + strand, within GFF1446

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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300,826 + -0.7
300,826 + -1.8
300,831 - -0.4
302,642 - GFF1446 0.44 +0.2
302,867 - GFF1446 0.63 -0.3
302,893 + GFF1446 0.65 -0.2

Or see this region's nucleotide sequence