Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1431 and GFF1432 overlap by 4 nucleotides GFF1432 and GFF1433 are separated by 151 nucleotides
GFF1431 - Flagellar biosynthesis protein FlhA, at 285,634 to 287,709
GFF1431
GFF1432 - Flagellar biosynthesis protein FlhB, at 287,706 to 288,863
GFF1432
GFF1433 - hypothetical protein, at 289,015 to 290,508
GFF1433
Position (kb) 287
288
289 Strain fitness (log2 ratio) -1
0
1
2 at 286.991 kb on + strand, within GFF1431 at 286.991 kb on + strand, within GFF1431 at 286.992 kb on - strand, within GFF1431 at 286.992 kb on - strand, within GFF1431 at 286.992 kb on - strand, within GFF1431 at 287.526 kb on - strand at 287.526 kb on - strand at 287.526 kb on - strand at 287.824 kb on + strand, within GFF1432 at 287.825 kb on - strand, within GFF1432 at 287.831 kb on - strand, within GFF1432 at 287.857 kb on + strand, within GFF1432 at 287.857 kb on + strand, within GFF1432 at 287.858 kb on - strand, within GFF1432 at 287.900 kb on - strand, within GFF1432 at 288.589 kb on + strand, within GFF1432 at 288.589 kb on + strand, within GFF1432 at 288.917 kb on + strand at 288.918 kb on - strand at 288.927 kb on + strand at 288.927 kb on + strand at 288.927 kb on + strand at 288.928 kb on - strand at 289.017 kb on - strand at 289.143 kb on - strand at 289.143 kb on - strand at 289.403 kb on + strand, within GFF1433 at 289.403 kb on + strand, within GFF1433 at 289.404 kb on - strand, within GFF1433 at 289.404 kb on - strand, within GFF1433 at 289.404 kb on - strand, within GFF1433 at 289.730 kb on + strand, within GFF1433 at 289.730 kb on + strand, within GFF1433 at 289.730 kb on + strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.742 kb on + strand, within GFF1433 at 289.742 kb on + strand, within GFF1433 at 289.742 kb on + strand, within GFF1433 at 289.823 kb on + strand, within GFF1433 at 289.824 kb on - strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.839 kb on - strand, within GFF1433 at 289.839 kb on - strand, within GFF1433
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 286,991 + GFF1431 0.65 -0.6 286,991 + GFF1431 0.65 +0.5 286,992 - GFF1431 0.65 -0.7 286,992 - GFF1431 0.65 +0.4 286,992 - GFF1431 0.65 -1.3 287,526 - -0.3 287,526 - -0.5 287,526 - +0.5 287,824 + GFF1432 0.10 -0.5 287,825 - GFF1432 0.10 +0.2 287,831 - GFF1432 0.11 +1.7 287,857 + GFF1432 0.13 -1.3 287,857 + GFF1432 0.13 -0.2 287,858 - GFF1432 0.13 +0.6 287,900 - GFF1432 0.17 +1.2 288,589 + GFF1432 0.76 +0.3 288,589 + GFF1432 0.76 -0.0 288,917 + -1.2 288,918 - -0.5 288,927 + -0.1 288,927 + -0.7 288,927 + -0.3 288,928 - +0.9 289,017 - +0.4 289,143 - +0.3 289,143 - -0.1 289,403 + GFF1433 0.26 -0.2 289,403 + GFF1433 0.26 -1.6 289,404 - GFF1433 0.26 +0.1 289,404 - GFF1433 0.26 -0.9 289,404 - GFF1433 0.26 -0.4 289,730 + GFF1433 0.48 -0.5 289,730 + GFF1433 0.48 -0.4 289,730 + GFF1433 0.48 -0.3 289,731 - GFF1433 0.48 +1.2 289,731 - GFF1433 0.48 -0.1 289,731 - GFF1433 0.48 -0.9 289,731 - GFF1433 0.48 -0.2 289,742 + GFF1433 0.49 +2.0 289,742 + GFF1433 0.49 -0.7 289,742 + GFF1433 0.49 -0.2 289,823 + GFF1433 0.54 -0.2 289,824 - GFF1433 0.54 +0.6 289,838 + GFF1433 0.55 +0.3 289,838 + GFF1433 0.55 -0.7 289,838 + GFF1433 0.55 +0.3 289,838 + GFF1433 0.55 -0.3 289,839 - GFF1433 0.55 +0.4 289,839 - GFF1433 0.55 +0.3
Or see this region's nucleotide sequence