Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1394 and GFF1395 are separated by 22 nucleotides GFF1395 and GFF1396 are separated by 3 nucleotides
GFF1394 - ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27), at 249,781 to 251,574
GFF1394
GFF1395 - HlyD family secretion protein, at 251,597 to 253,018
GFF1395
GFF1396 - cyclolysin secretion ATP-binding protein, at 253,022 to 255,229
GFF1396
Position (kb) 251
252
253
254 Strain fitness (log2 ratio) -2
-1
0
1
2 at 250.621 kb on + strand, within GFF1394 at 250.621 kb on + strand, within GFF1394 at 250.622 kb on - strand, within GFF1394 at 250.622 kb on - strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.814 kb on - strand, within GFF1394 at 250.814 kb on - strand, within GFF1394 at 250.814 kb on - strand, within GFF1394 at 250.814 kb on - strand, within GFF1394 at 250.814 kb on - strand, within GFF1394 at 251.143 kb on + strand, within GFF1394 at 251.143 kb on + strand, within GFF1394 at 251.143 kb on + strand, within GFF1394 at 251.144 kb on - strand, within GFF1394 at 251.144 kb on - strand, within GFF1394 at 251.200 kb on + strand, within GFF1394 at 251.200 kb on + strand, within GFF1394 at 251.200 kb on + strand, within GFF1394 at 251.201 kb on - strand, within GFF1394 at 251.201 kb on - strand, within GFF1394 at 251.410 kb on + strand at 251.411 kb on - strand at 251.411 kb on - strand at 251.649 kb on + strand at 251.747 kb on - strand, within GFF1395 at 251.770 kb on - strand, within GFF1395 at 251.841 kb on + strand, within GFF1395 at 251.850 kb on + strand, within GFF1395 at 251.930 kb on + strand, within GFF1395 at 251.930 kb on + strand, within GFF1395 at 251.931 kb on - strand, within GFF1395 at 251.931 kb on - strand, within GFF1395 at 251.931 kb on - strand, within GFF1395 at 252.273 kb on + strand, within GFF1395 at 252.976 kb on + strand at 253.023 kb on + strand at 253.024 kb on - strand at 253.233 kb on + strand at 253.590 kb on + strand, within GFF1396 at 253.591 kb on - strand, within GFF1396 at 253.591 kb on - strand, within GFF1396 at 253.591 kb on - strand, within GFF1396 at 253.965 kb on + strand, within GFF1396 at 253.965 kb on + strand, within GFF1396 at 253.966 kb on - strand, within GFF1396
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 250,621 + GFF1394 0.47 -0.3 250,621 + GFF1394 0.47 +0.5 250,622 - GFF1394 0.47 +0.2 250,622 - GFF1394 0.47 +0.2 250,813 + GFF1394 0.58 +0.7 250,813 + GFF1394 0.58 -0.3 250,813 + GFF1394 0.58 +1.0 250,813 + GFF1394 0.58 +0.9 250,813 + GFF1394 0.58 -0.6 250,813 + GFF1394 0.58 +0.4 250,813 + GFF1394 0.58 +0.3 250,814 - GFF1394 0.58 -0.0 250,814 - GFF1394 0.58 +0.6 250,814 - GFF1394 0.58 +0.6 250,814 - GFF1394 0.58 +0.4 250,814 - GFF1394 0.58 +0.4 251,143 + GFF1394 0.76 +0.8 251,143 + GFF1394 0.76 +1.3 251,143 + GFF1394 0.76 -0.2 251,144 - GFF1394 0.76 +0.2 251,144 - GFF1394 0.76 +0.4 251,200 + GFF1394 0.79 +1.6 251,200 + GFF1394 0.79 +0.8 251,200 + GFF1394 0.79 -2.4 251,201 - GFF1394 0.79 +0.6 251,201 - GFF1394 0.79 +0.7 251,410 + +1.9 251,411 - +0.2 251,411 - -1.0 251,649 + -0.9 251,747 - GFF1395 0.11 -0.3 251,770 - GFF1395 0.12 +0.4 251,841 + GFF1395 0.17 -1.5 251,850 + GFF1395 0.18 -0.8 251,930 + GFF1395 0.23 -0.6 251,930 + GFF1395 0.23 -0.2 251,931 - GFF1395 0.23 +0.3 251,931 - GFF1395 0.23 -0.1 251,931 - GFF1395 0.23 -0.5 252,273 + GFF1395 0.48 +0.4 252,976 + +0.8 253,023 + +2.3 253,024 - -0.2 253,233 + -0.3 253,590 + GFF1396 0.26 -1.1 253,591 - GFF1396 0.26 +0.8 253,591 - GFF1396 0.26 -0.3 253,591 - GFF1396 0.26 +0.0 253,965 + GFF1396 0.43 -0.1 253,965 + GFF1396 0.43 +1.1 253,966 - GFF1396 0.43 -0.1
Or see this region's nucleotide sequence