Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1370

Experiment: Ying_all64 rep C; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1369 and GFF1370 overlap by 1 nucleotidesGFF1370 and GFF1371 are separated by 63 nucleotides GFF1369 - Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A, at 225,417 to 226,700 GFF1369 GFF1370 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 226,700 to 227,680 GFF1370 GFF1371 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 227,744 to 229,315 GFF1371 Position (kb) 226 227 228Strain fitness (log2 ratio) -2 -1 0 1 2 3at 225.773 kb on - strand, within GFF1369at 225.784 kb on + strand, within GFF1369at 225.784 kb on + strand, within GFF1369at 225.785 kb on - strand, within GFF1369at 225.785 kb on - strand, within GFF1369at 225.785 kb on - strand, within GFF1369at 225.785 kb on - strand, within GFF1369at 226.315 kb on + strand, within GFF1369at 226.315 kb on + strand, within GFF1369at 226.316 kb on - strand, within GFF1369at 226.573 kb on + strandat 226.573 kb on + strandat 226.573 kb on + strandat 226.574 kb on - strandat 226.574 kb on - strandat 226.749 kb on + strandat 226.750 kb on - strandat 226.750 kb on - strandat 226.750 kb on - strandat 226.774 kb on + strandat 226.775 kb on - strandat 226.775 kb on - strandat 226.775 kb on - strandat 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.806 kb on + strand, within GFF1370at 226.807 kb on - strand, within GFF1370at 226.807 kb on - strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.025 kb on + strand, within GFF1370at 227.026 kb on - strand, within GFF1370at 227.026 kb on - strand, within GFF1370at 227.026 kb on - strand, within GFF1370at 227.238 kb on - strand, within GFF1370at 227.328 kb on + strand, within GFF1370at 227.328 kb on + strand, within GFF1370at 227.328 kb on - strand, within GFF1370at 227.329 kb on - strand, within GFF1370at 227.329 kb on - strand, within GFF1370at 227.411 kb on + strand, within GFF1370at 227.411 kb on + strand, within GFF1370at 227.595 kb on + strandat 227.595 kb on + strandat 227.595 kb on + strandat 227.596 kb on - strandat 227.596 kb on - strandat 227.750 kb on + strandat 227.750 kb on + strandat 227.751 kb on - strandat 227.751 kb on - strandat 227.751 kb on - strandat 227.751 kb on - strandat 227.965 kb on - strand, within GFF1371at 227.979 kb on + strand, within GFF1371at 227.979 kb on + strand, within GFF1371at 227.979 kb on + strand, within GFF1371at 227.979 kb on + strand, within GFF1371at 227.980 kb on - strand, within GFF1371at 227.980 kb on - strand, within GFF1371at 227.980 kb on - strand, within GFF1371at 228.030 kb on + strand, within GFF1371at 228.030 kb on + strand, within GFF1371at 228.031 kb on - strand, within GFF1371at 228.069 kb on + strand, within GFF1371at 228.069 kb on + strand, within GFF1371at 228.069 kb on + strand, within GFF1371at 228.069 kb on + strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.070 kb on - strand, within GFF1371at 228.105 kb on + strand, within GFF1371at 228.106 kb on - strand, within GFF1371at 228.106 kb on - strand, within GFF1371at 228.198 kb on + strand, within GFF1371at 228.198 kb on + strand, within GFF1371at 228.198 kb on + strand, within GFF1371at 228.198 kb on + strand, within GFF1371at 228.198 kb on + strand, within GFF1371at 228.199 kb on - strand, within GFF1371at 228.243 kb on + strand, within GFF1371at 228.243 kb on + strand, within GFF1371at 228.243 kb on + strand, within GFF1371at 228.243 kb on + strand, within GFF1371at 228.244 kb on - strand, within GFF1371at 228.244 kb on - strand, within GFF1371at 228.244 kb on - strand, within GFF1371at 228.408 kb on + strand, within GFF1371at 228.408 kb on + strand, within GFF1371at 228.408 kb on + strand, within GFF1371at 228.409 kb on - strand, within GFF1371at 228.409 kb on - strand, within GFF1371at 228.409 kb on - strand, within GFF1371at 228.651 kb on + strand, within GFF1371at 228.651 kb on + strand, within GFF1371at 228.651 kb on + strand, within GFF1371at 228.651 kb on + strand, within GFF1371at 228.652 kb on - strand, within GFF1371at 228.652 kb on - strand, within GFF1371at 228.652 kb on - strand, within GFF1371

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
remove
225,773 - GFF1369 0.28 +1.3
225,784 + GFF1369 0.29 -0.1
225,784 + GFF1369 0.29 -0.3
225,785 - GFF1369 0.29 +0.1
225,785 - GFF1369 0.29 +2.1
225,785 - GFF1369 0.29 -1.3
225,785 - GFF1369 0.29 +0.2
226,315 + GFF1369 0.70 +0.5
226,315 + GFF1369 0.70 -0.6
226,316 - GFF1369 0.70 +0.0
226,573 + +0.8
226,573 + -0.5
226,573 + -0.5
226,574 - -0.5
226,574 - -0.7
226,749 + +3.1
226,750 - -0.9
226,750 - -0.3
226,750 - -1.8
226,774 + -0.8
226,775 - -0.7
226,775 - -0.5
226,775 - -0.9
226,806 + GFF1370 0.11 -0.4
226,806 + GFF1370 0.11 -0.1
226,806 + GFF1370 0.11 -0.7
226,806 + GFF1370 0.11 -1.0
226,806 + GFF1370 0.11 -1.3
226,807 - GFF1370 0.11 -0.2
226,807 - GFF1370 0.11 -0.3
227,025 + GFF1370 0.33 -0.5
227,025 + GFF1370 0.33 +0.7
227,025 + GFF1370 0.33 -1.0
227,025 + GFF1370 0.33 -0.4
227,026 - GFF1370 0.33 -0.1
227,026 - GFF1370 0.33 -2.4
227,026 - GFF1370 0.33 -0.9
227,238 - GFF1370 0.55 -0.5
227,328 + GFF1370 0.64 -0.6
227,328 + GFF1370 0.64 -1.1
227,328 - GFF1370 0.64 -1.0
227,329 - GFF1370 0.64 +0.3
227,329 - GFF1370 0.64 -1.2
227,411 + GFF1370 0.72 -1.8
227,411 + GFF1370 0.72 -0.6
227,595 + -0.8
227,595 + -0.1
227,595 + -1.1
227,596 - +0.2
227,596 - -0.8
227,750 + -0.6
227,750 + -0.4
227,751 - -0.4
227,751 - -0.3
227,751 - -0.1
227,751 - -0.1
227,965 - GFF1371 0.14 -0.3
227,979 + GFF1371 0.15 -1.5
227,979 + GFF1371 0.15 +0.5
227,979 + GFF1371 0.15 -0.1
227,979 + GFF1371 0.15 -0.4
227,980 - GFF1371 0.15 +0.0
227,980 - GFF1371 0.15 +0.4
227,980 - GFF1371 0.15 -0.9
228,030 + GFF1371 0.18 +0.5
228,030 + GFF1371 0.18 +1.3
228,031 - GFF1371 0.18 -0.1
228,069 + GFF1371 0.21 -0.9
228,069 + GFF1371 0.21 -0.1
228,069 + GFF1371 0.21 -1.4
228,069 + GFF1371 0.21 -1.6
228,070 - GFF1371 0.21 -0.7
228,070 - GFF1371 0.21 -0.5
228,070 - GFF1371 0.21 +1.1
228,070 - GFF1371 0.21 -1.1
228,070 - GFF1371 0.21 -0.6
228,070 - GFF1371 0.21 +3.1
228,070 - GFF1371 0.21 -0.3
228,070 - GFF1371 0.21 -0.2
228,105 + GFF1371 0.23 -0.6
228,106 - GFF1371 0.23 -0.5
228,106 - GFF1371 0.23 -0.4
228,198 + GFF1371 0.29 -0.7
228,198 + GFF1371 0.29 +3.6
228,198 + GFF1371 0.29 +0.9
228,198 + GFF1371 0.29 -1.7
228,198 + GFF1371 0.29 -2.5
228,199 - GFF1371 0.29 -0.6
228,243 + GFF1371 0.32 -0.6
228,243 + GFF1371 0.32 -1.0
228,243 + GFF1371 0.32 -1.9
228,243 + GFF1371 0.32 -1.0
228,244 - GFF1371 0.32 +1.4
228,244 - GFF1371 0.32 +0.0
228,244 - GFF1371 0.32 -0.3
228,408 + GFF1371 0.42 +0.0
228,408 + GFF1371 0.42 -0.6
228,408 + GFF1371 0.42 -0.4
228,409 - GFF1371 0.42 -2.3
228,409 - GFF1371 0.42 -1.4
228,409 - GFF1371 0.42 +0.3
228,651 + GFF1371 0.58 -1.2
228,651 + GFF1371 0.58 -1.0
228,651 + GFF1371 0.58 +1.7
228,651 + GFF1371 0.58 -1.1
228,652 - GFF1371 0.58 -0.1
228,652 - GFF1371 0.58 -0.2
228,652 - GFF1371 0.58 -1.7

Or see this region's nucleotide sequence