Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1348 and GFF1349 are separated by 103 nucleotides GFF1349 and GFF1350 overlap by 4 nucleotides
GFF1348 - Putative sulfite oxidase subunit YedY, at 200,637 to 201,641
GFF1348
GFF1349 - Cytochrome c-type biogenesis protein CcsA/ResC, at 201,745 to 203,115
GFF1349
GFF1350 - Cytochrome c-type biogenesis protein Ccs1/ResB, at 203,112 to 205,265
GFF1350
Position (kb) 201
202
203
204 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 200.809 kb on + strand, within GFF1348 at 200.810 kb on - strand, within GFF1348 at 200.810 kb on - strand, within GFF1348 at 200.810 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.908 kb on + strand, within GFF1348 at 200.908 kb on + strand, within GFF1348 at 200.968 kb on + strand, within GFF1348 at 200.968 kb on + strand, within GFF1348 at 201.031 kb on + strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.032 kb on - strand, within GFF1348 at 201.103 kb on + strand, within GFF1348 at 201.103 kb on + strand, within GFF1348 at 201.104 kb on - strand, within GFF1348 at 201.104 kb on - strand, within GFF1348 at 201.205 kb on + strand, within GFF1348 at 201.205 kb on + strand, within GFF1348 at 201.205 kb on + strand, within GFF1348 at 201.206 kb on - strand, within GFF1348 at 201.322 kb on + strand, within GFF1348 at 201.323 kb on - strand, within GFF1348 at 201.358 kb on + strand, within GFF1348 at 201.358 kb on + strand, within GFF1348 at 201.358 kb on + strand, within GFF1348 at 201.358 kb on + strand, within GFF1348 at 201.359 kb on - strand, within GFF1348 at 201.359 kb on - strand, within GFF1348 at 201.359 kb on - strand, within GFF1348 at 201.370 kb on + strand, within GFF1348 at 201.370 kb on + strand, within GFF1348 at 201.371 kb on - strand, within GFF1348 at 201.371 kb on - strand, within GFF1348 at 201.388 kb on + strand, within GFF1348 at 201.388 kb on + strand, within GFF1348 at 201.389 kb on - strand, within GFF1348 at 201.389 kb on - strand, within GFF1348 at 201.389 kb on - strand, within GFF1348 at 201.588 kb on + strand at 201.588 kb on + strand at 201.588 kb on + strand at 201.589 kb on - strand at 201.589 kb on - strand at 201.589 kb on - strand at 201.704 kb on + strand at 201.704 kb on + strand at 201.704 kb on + strand at 201.704 kb on + strand at 201.704 kb on + strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.705 kb on - strand at 201.758 kb on + strand at 202.265 kb on + strand, within GFF1349 at 202.482 kb on - strand, within GFF1349 at 202.820 kb on + strand, within GFF1349 at 202.821 kb on - strand, within GFF1349 at 202.962 kb on - strand, within GFF1349 at 203.110 kb on - strand at 203.110 kb on - strand at 203.263 kb on + strand at 203.953 kb on + strand, within GFF1350 at 203.954 kb on - strand, within GFF1350 at 203.954 kb on - strand, within GFF1350 at 203.954 kb on - strand, within GFF1350 at 203.998 kb on + strand, within GFF1350 at 203.998 kb on + strand, within GFF1350 at 203.999 kb on - strand, within GFF1350 at 203.999 kb on - strand, within GFF1350
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 200,809 + GFF1348 0.17 +1.1 200,810 - GFF1348 0.17 +0.4 200,810 - GFF1348 0.17 +1.3 200,810 - GFF1348 0.17 +0.0 200,819 - GFF1348 0.18 +0.2 200,819 - GFF1348 0.18 -0.2 200,819 - GFF1348 0.18 -0.4 200,819 - GFF1348 0.18 -0.3 200,819 - GFF1348 0.18 -0.3 200,908 + GFF1348 0.27 -0.4 200,908 + GFF1348 0.27 +0.7 200,968 + GFF1348 0.33 -0.3 200,968 + GFF1348 0.33 -0.2 201,031 + GFF1348 0.39 +2.9 201,032 - GFF1348 0.39 -0.9 201,032 - GFF1348 0.39 -0.8 201,032 - GFF1348 0.39 +0.0 201,032 - GFF1348 0.39 -0.9 201,032 - GFF1348 0.39 -0.6 201,032 - GFF1348 0.39 -0.0 201,032 - GFF1348 0.39 +0.0 201,032 - GFF1348 0.39 -0.0 201,103 + GFF1348 0.46 +0.2 201,103 + GFF1348 0.46 -0.4 201,104 - GFF1348 0.46 +1.7 201,104 - GFF1348 0.46 -0.2 201,205 + GFF1348 0.57 +0.6 201,205 + GFF1348 0.57 +0.3 201,205 + GFF1348 0.57 -0.3 201,206 - GFF1348 0.57 +0.1 201,322 + GFF1348 0.68 -1.9 201,323 - GFF1348 0.68 +0.0 201,358 + GFF1348 0.72 -0.7 201,358 + GFF1348 0.72 -0.9 201,358 + GFF1348 0.72 -0.4 201,358 + GFF1348 0.72 -1.0 201,359 - GFF1348 0.72 +1.0 201,359 - GFF1348 0.72 +0.2 201,359 - GFF1348 0.72 -0.3 201,370 + GFF1348 0.73 -0.1 201,370 + GFF1348 0.73 +0.2 201,371 - GFF1348 0.73 -0.8 201,371 - GFF1348 0.73 -0.8 201,388 + GFF1348 0.75 -0.9 201,388 + GFF1348 0.75 +0.2 201,389 - GFF1348 0.75 -0.3 201,389 - GFF1348 0.75 -0.1 201,389 - GFF1348 0.75 -0.4 201,588 + -1.3 201,588 + -1.3 201,588 + -0.9 201,589 - +0.1 201,589 - -1.2 201,589 - -0.9 201,704 + -0.7 201,704 + +0.1 201,704 + -0.2 201,704 + -1.8 201,704 + -0.1 201,705 - -0.3 201,705 - -0.6 201,705 - -0.5 201,705 - -0.9 201,705 - -0.7 201,705 - +0.2 201,705 - +1.0 201,705 - +0.9 201,705 - +0.5 201,758 + +0.9 202,265 + GFF1349 0.38 -0.9 202,482 - GFF1349 0.54 +0.1 202,820 + GFF1349 0.78 +3.7 202,821 - GFF1349 0.78 +0.6 202,962 - GFF1349 0.89 +0.7 203,110 - +0.7 203,110 - -0.6 203,263 + +1.0 203,953 + GFF1350 0.39 +0.9 203,954 - GFF1350 0.39 +1.0 203,954 - GFF1350 0.39 +0.4 203,954 - GFF1350 0.39 +0.9 203,998 + GFF1350 0.41 +0.9 203,998 + GFF1350 0.41 +2.0 203,999 - GFF1350 0.41 +2.5 203,999 - GFF1350 0.41 +1.9
Or see this region's nucleotide sequence