Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1318

Experiment: Ying_all64 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1316 and GFF1317 are separated by 8 nucleotidesGFF1317 and GFF1318 are separated by 9 nucleotidesGFF1318 and GFF1319 overlap by 4 nucleotides GFF1316 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 166,739 to 168,019 GFF1316 GFF1317 - YrbA protein, at 168,028 to 168,273 GFF1317 GFF1318 - ABC-type multidrug transport system, permease component, at 168,283 to 169,038 GFF1318 GFF1319 - ABC-type multidrug transport system, ATPase component, at 169,035 to 169,973 GFF1319 Position (kb) 168 169 170Strain fitness (log2 ratio) -1 0 1 2 3at 168.034 kb on - strandat 168.034 kb on - strandat 168.065 kb on + strand, within GFF1317at 168.065 kb on + strand, within GFF1317at 168.065 kb on + strand, within GFF1317at 168.066 kb on - strand, within GFF1317at 168.066 kb on - strand, within GFF1317at 168.066 kb on - strand, within GFF1317at 168.066 kb on - strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.144 kb on + strand, within GFF1317at 168.145 kb on - strand, within GFF1317at 168.145 kb on - strand, within GFF1317at 168.145 kb on - strand, within GFF1317at 168.299 kb on + strandat 168.299 kb on + strandat 168.299 kb on + strandat 168.407 kb on + strand, within GFF1318at 168.408 kb on - strand, within GFF1318at 168.428 kb on + strand, within GFF1318at 168.429 kb on - strand, within GFF1318at 168.429 kb on - strand, within GFF1318at 168.429 kb on - strand, within GFF1318at 168.429 kb on - strand, within GFF1318at 168.429 kb on - strand, within GFF1318at 168.488 kb on + strand, within GFF1318at 168.488 kb on + strand, within GFF1318at 168.488 kb on + strand, within GFF1318at 168.488 kb on + strand, within GFF1318at 168.489 kb on - strand, within GFF1318at 168.489 kb on - strand, within GFF1318at 168.489 kb on - strand, within GFF1318at 168.489 kb on - strand, within GFF1318at 168.489 kb on - strand, within GFF1318at 168.728 kb on + strand, within GFF1318at 168.728 kb on + strand, within GFF1318at 168.728 kb on + strand, within GFF1318at 168.728 kb on + strand, within GFF1318at 168.728 kb on + strand, within GFF1318at 168.729 kb on - strand, within GFF1318at 168.729 kb on - strand, within GFF1318at 168.729 kb on - strand, within GFF1318at 168.881 kb on + strand, within GFF1318at 168.881 kb on + strand, within GFF1318at 168.881 kb on + strand, within GFF1318at 168.881 kb on + strand, within GFF1318at 168.881 kb on + strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.882 kb on - strand, within GFF1318at 168.896 kb on + strand, within GFF1318at 168.897 kb on - strand, within GFF1318at 168.941 kb on + strand, within GFF1318at 168.941 kb on + strand, within GFF1318at 168.941 kb on + strand, within GFF1318at 168.941 kb on + strand, within GFF1318at 168.942 kb on - strand, within GFF1318at 168.942 kb on - strand, within GFF1318at 168.942 kb on - strand, within GFF1318at 168.942 kb on - strand, within GFF1318at 168.942 kb on - strand, within GFF1318at 169.014 kb on - strandat 169.014 kb on - strandat 169.014 kb on - strandat 169.014 kb on - strandat 169.014 kb on - strandat 169.014 kb on - strandat 169.387 kb on + strand, within GFF1319at 169.387 kb on + strand, within GFF1319at 169.388 kb on - strand, within GFF1319at 169.751 kb on - strand, within GFF1319at 169.936 kb on + strandat 169.937 kb on - strandat 169.937 kb on - strandat 169.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2
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168,034 - -0.9
168,034 - +0.1
168,065 + GFF1317 0.15 -0.5
168,065 + GFF1317 0.15 +1.0
168,065 + GFF1317 0.15 +0.4
168,066 - GFF1317 0.15 +1.5
168,066 - GFF1317 0.15 +0.5
168,066 - GFF1317 0.15 -0.5
168,066 - GFF1317 0.15 -0.4
168,144 + GFF1317 0.47 +0.2
168,144 + GFF1317 0.47 +0.4
168,144 + GFF1317 0.47 +0.2
168,144 + GFF1317 0.47 +0.3
168,144 + GFF1317 0.47 +0.1
168,144 + GFF1317 0.47 -0.6
168,145 - GFF1317 0.48 -0.2
168,145 - GFF1317 0.48 +0.4
168,145 - GFF1317 0.48 -0.6
168,299 + +0.5
168,299 + -0.9
168,299 + +0.9
168,407 + GFF1318 0.16 +1.0
168,408 - GFF1318 0.17 +0.8
168,428 + GFF1318 0.19 +3.2
168,429 - GFF1318 0.19 +1.2
168,429 - GFF1318 0.19 -0.0
168,429 - GFF1318 0.19 +1.6
168,429 - GFF1318 0.19 +0.6
168,429 - GFF1318 0.19 +0.8
168,488 + GFF1318 0.27 +1.6
168,488 + GFF1318 0.27 +0.8
168,488 + GFF1318 0.27 -1.1
168,488 + GFF1318 0.27 -0.2
168,489 - GFF1318 0.27 +1.5
168,489 - GFF1318 0.27 +0.6
168,489 - GFF1318 0.27 +1.0
168,489 - GFF1318 0.27 +1.0
168,489 - GFF1318 0.27 +1.4
168,728 + GFF1318 0.59 +1.2
168,728 + GFF1318 0.59 +0.7
168,728 + GFF1318 0.59 +0.9
168,728 + GFF1318 0.59 +1.1
168,728 + GFF1318 0.59 +1.4
168,729 - GFF1318 0.59 +1.3
168,729 - GFF1318 0.59 +0.8
168,729 - GFF1318 0.59 +1.9
168,881 + GFF1318 0.79 +0.7
168,881 + GFF1318 0.79 +0.8
168,881 + GFF1318 0.79 +1.4
168,881 + GFF1318 0.79 -0.1
168,881 + GFF1318 0.79 +1.2
168,882 - GFF1318 0.79 +0.2
168,882 - GFF1318 0.79 +0.6
168,882 - GFF1318 0.79 +0.5
168,882 - GFF1318 0.79 +0.9
168,882 - GFF1318 0.79 +0.1
168,882 - GFF1318 0.79 +0.8
168,896 + GFF1318 0.81 +1.3
168,897 - GFF1318 0.81 +1.3
168,941 + GFF1318 0.87 +1.0
168,941 + GFF1318 0.87 +1.4
168,941 + GFF1318 0.87 +0.8
168,941 + GFF1318 0.87 +1.4
168,942 - GFF1318 0.87 +1.7
168,942 - GFF1318 0.87 +0.7
168,942 - GFF1318 0.87 +2.0
168,942 - GFF1318 0.87 +1.9
168,942 - GFF1318 0.87 +0.9
169,014 - +0.6
169,014 - +0.2
169,014 - +0.9
169,014 - +0.3
169,014 - +0.7
169,014 - +0.4
169,387 + GFF1319 0.37 +0.7
169,387 + GFF1319 0.37 +0.8
169,388 - GFF1319 0.38 +0.9
169,751 - GFF1319 0.76 +1.0
169,936 + +1.4
169,937 - -0.6
169,937 - +1.0
169,937 - +0.5

Or see this region's nucleotide sequence