Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1283 and GFF1284 are separated by 8 nucleotides GFF1284 and GFF1285 are separated by 8 nucleotides GFF1285 and GFF1286 overlap by 4 nucleotides GFF1286 and GFF1287 overlap by 4 nucleotides
GFF1283 - FIG002842: hypothetical protein, at 140,879 to 141,634
GFF1283
GFF1284 - FIG003276: zinc-binding protein, at 141,643 to 141,846
GFF1284
GFF1285 - Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-), at 141,855 to 142,307
GFF1285
GFF1286 - putative ATP/GTP-binding protein, at 142,304 to 143,182
GFF1286
GFF1287 - Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1), at 143,179 to 144,426
GFF1287
Position (kb) 142
143
144 Strain fitness (log2 ratio) -2
-1
0
1 at 141.712 kb on + strand, within GFF1284 at 141.713 kb on - strand, within GFF1284 at 141.713 kb on - strand, within GFF1284 at 142.028 kb on - strand, within GFF1285 at 142.157 kb on - strand, within GFF1285 at 142.165 kb on + strand, within GFF1285 at 142.165 kb on + strand, within GFF1285 at 142.165 kb on + strand, within GFF1285 at 142.165 kb on + strand, within GFF1285 at 142.165 kb on + strand, within GFF1285 at 142.165 kb on + strand, within GFF1285 at 142.165 kb on + strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.166 kb on - strand, within GFF1285 at 142.333 kb on - strand at 142.350 kb on + strand at 142.473 kb on + strand, within GFF1286 at 142.473 kb on + strand, within GFF1286 at 142.473 kb on + strand, within GFF1286 at 142.473 kb on + strand, within GFF1286 at 142.474 kb on - strand, within GFF1286 at 142.474 kb on - strand, within GFF1286 at 142.494 kb on + strand, within GFF1286 at 142.494 kb on + strand, within GFF1286 at 142.494 kb on + strand, within GFF1286 at 142.494 kb on + strand, within GFF1286 at 142.494 kb on + strand, within GFF1286 at 142.494 kb on + strand, within GFF1286 at 142.494 kb on + strand, within GFF1286 at 142.495 kb on - strand, within GFF1286 at 142.495 kb on - strand, within GFF1286 at 142.495 kb on - strand, within GFF1286 at 142.587 kb on + strand, within GFF1286 at 142.587 kb on + strand, within GFF1286 at 142.587 kb on + strand, within GFF1286 at 142.587 kb on + strand, within GFF1286 at 142.587 kb on + strand, within GFF1286 at 142.588 kb on - strand, within GFF1286 at 142.588 kb on - strand, within GFF1286 at 142.588 kb on - strand, within GFF1286 at 142.588 kb on - strand, within GFF1286 at 142.588 kb on - strand, within GFF1286 at 142.608 kb on + strand, within GFF1286 at 142.608 kb on + strand, within GFF1286 at 142.608 kb on + strand, within GFF1286 at 142.609 kb on - strand, within GFF1286 at 142.609 kb on - strand, within GFF1286 at 142.644 kb on + strand, within GFF1286 at 142.644 kb on + strand, within GFF1286 at 142.644 kb on + strand, within GFF1286 at 142.645 kb on - strand, within GFF1286 at 142.645 kb on - strand, within GFF1286 at 142.707 kb on + strand, within GFF1286 at 142.851 kb on + strand, within GFF1286 at 142.851 kb on + strand, within GFF1286 at 142.851 kb on + strand, within GFF1286 at 142.851 kb on + strand, within GFF1286 at 142.851 kb on + strand, within GFF1286 at 142.851 kb on + strand, within GFF1286 at 143.189 kb on + strand at 143.210 kb on + strand at 143.210 kb on + strand at 143.210 kb on + strand at 143.210 kb on + strand at 143.211 kb on - strand at 143.211 kb on - strand at 143.211 kb on - strand at 143.325 kb on - strand, within GFF1287 at 143.325 kb on - strand, within GFF1287 at 143.325 kb on - strand, within GFF1287 at 143.325 kb on - strand, within GFF1287 at 143.498 kb on + strand, within GFF1287 at 143.498 kb on + strand, within GFF1287 at 143.499 kb on - strand, within GFF1287
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 141,712 + GFF1284 0.34 -0.6 141,713 - GFF1284 0.34 -0.4 141,713 - GFF1284 0.34 +0.2 142,028 - GFF1285 0.38 +0.0 142,157 - GFF1285 0.67 +0.0 142,165 + GFF1285 0.68 +0.1 142,165 + GFF1285 0.68 +0.6 142,165 + GFF1285 0.68 -0.0 142,165 + GFF1285 0.68 -0.1 142,165 + GFF1285 0.68 +1.7 142,165 + GFF1285 0.68 +1.6 142,165 + GFF1285 0.68 +0.2 142,166 - GFF1285 0.69 -0.7 142,166 - GFF1285 0.69 +0.8 142,166 - GFF1285 0.69 +0.0 142,166 - GFF1285 0.69 -0.2 142,166 - GFF1285 0.69 +0.2 142,166 - GFF1285 0.69 +0.3 142,166 - GFF1285 0.69 +1.3 142,166 - GFF1285 0.69 +0.1 142,166 - GFF1285 0.69 +0.1 142,166 - GFF1285 0.69 -0.4 142,166 - GFF1285 0.69 +1.2 142,333 - +0.3 142,350 + -0.2 142,473 + GFF1286 0.19 +0.6 142,473 + GFF1286 0.19 -0.9 142,473 + GFF1286 0.19 -0.7 142,473 + GFF1286 0.19 -0.4 142,474 - GFF1286 0.19 -0.7 142,474 - GFF1286 0.19 -0.6 142,494 + GFF1286 0.22 +0.5 142,494 + GFF1286 0.22 -0.2 142,494 + GFF1286 0.22 +0.3 142,494 + GFF1286 0.22 +0.4 142,494 + GFF1286 0.22 -0.3 142,494 + GFF1286 0.22 -0.4 142,494 + GFF1286 0.22 -1.7 142,495 - GFF1286 0.22 +0.8 142,495 - GFF1286 0.22 -0.4 142,495 - GFF1286 0.22 +0.8 142,587 + GFF1286 0.32 +0.4 142,587 + GFF1286 0.32 -0.8 142,587 + GFF1286 0.32 +0.1 142,587 + GFF1286 0.32 -1.3 142,587 + GFF1286 0.32 -0.7 142,588 - GFF1286 0.32 +0.2 142,588 - GFF1286 0.32 +0.5 142,588 - GFF1286 0.32 +1.0 142,588 - GFF1286 0.32 +0.3 142,588 - GFF1286 0.32 +0.9 142,608 + GFF1286 0.35 -0.6 142,608 + GFF1286 0.35 -1.1 142,608 + GFF1286 0.35 -0.1 142,609 - GFF1286 0.35 -1.5 142,609 - GFF1286 0.35 +0.9 142,644 + GFF1286 0.39 +1.3 142,644 + GFF1286 0.39 +0.5 142,644 + GFF1286 0.39 -0.2 142,645 - GFF1286 0.39 -0.8 142,645 - GFF1286 0.39 -0.3 142,707 + GFF1286 0.46 +1.7 142,851 + GFF1286 0.62 -0.2 142,851 + GFF1286 0.62 -0.7 142,851 + GFF1286 0.62 -0.0 142,851 + GFF1286 0.62 +0.7 142,851 + GFF1286 0.62 +0.4 142,851 + GFF1286 0.62 -0.1 143,189 + -0.5 143,210 + -0.1 143,210 + -1.5 143,210 + -0.2 143,210 + +0.8 143,211 - +1.3 143,211 - +0.5 143,211 - +1.3 143,325 - GFF1287 0.12 -0.6 143,325 - GFF1287 0.12 -0.2 143,325 - GFF1287 0.12 -1.1 143,325 - GFF1287 0.12 -0.0 143,498 + GFF1287 0.26 +0.7 143,498 + GFF1287 0.26 +0.7 143,499 - GFF1287 0.26 -1.8
Or see this region's nucleotide sequence