Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1239 and GFF1240 are separated by 8 nucleotides GFF1240 and GFF1241 are separated by 62 nucleotides GFF1241 and GFF1242 overlap by 4 nucleotides
GFF1239 - FIG00933538: hypothetical protein, at 98,777 to 99,202
GFF1239
GFF1240 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 99,211 to 99,942
GFF1240
GFF1241 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 100,005 to 101,792
GFF1241
GFF1242 - mRNA 3-end processing factor, at 101,789 to 102,808
GFF1242
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 99.018 kb on + strand, within GFF1239 at 99.019 kb on - strand, within GFF1239 at 99.019 kb on - strand, within GFF1239 at 99.019 kb on - strand, within GFF1239 at 99.183 kb on + strand at 99.183 kb on + strand at 99.183 kb on + strand at 99.183 kb on + strand at 99.183 kb on + strand at 99.184 kb on - strand at 99.184 kb on - strand at 99.184 kb on - strand at 99.194 kb on + strand at 99.194 kb on + strand at 99.194 kb on + strand at 99.195 kb on - strand at 99.195 kb on - strand at 99.195 kb on - strand at 99.953 kb on + strand at 99.953 kb on + strand at 99.953 kb on + strand at 99.953 kb on + strand at 99.953 kb on + strand at 99.953 kb on + strand at 99.954 kb on - strand at 99.954 kb on - strand at 99.954 kb on - strand at 100.267 kb on + strand, within GFF1241 at 100.267 kb on + strand, within GFF1241 at 100.268 kb on - strand, within GFF1241 at 100.268 kb on - strand, within GFF1241 at 100.394 kb on - strand, within GFF1241 at 100.403 kb on - strand, within GFF1241 at 100.403 kb on - strand, within GFF1241 at 100.438 kb on + strand, within GFF1241 at 100.438 kb on + strand, within GFF1241 at 100.759 kb on + strand, within GFF1241 at 100.760 kb on - strand, within GFF1241 at 101.254 kb on + strand, within GFF1241 at 101.254 kb on + strand, within GFF1241 at 101.255 kb on - strand, within GFF1241 at 101.255 kb on - strand, within GFF1241 at 101.567 kb on - strand, within GFF1241 at 101.567 kb on - strand, within GFF1241 at 101.713 kb on + strand at 101.862 kb on + strand at 101.863 kb on - strand at 102.177 kb on + strand, within GFF1242 at 102.178 kb on - strand, within GFF1242 at 102.273 kb on + strand, within GFF1242 at 102.273 kb on + strand, within GFF1242 at 102.274 kb on - strand, within GFF1242 at 102.366 kb on + strand, within GFF1242 at 102.367 kb on - strand, within GFF1242 at 102.471 kb on + strand, within GFF1242 at 102.666 kb on + strand, within GFF1242 at 102.667 kb on - strand, within GFF1242 at 102.667 kb on - strand, within GFF1242 at 102.747 kb on + strand at 102.747 kb on + strand at 102.747 kb on + strand at 102.747 kb on + strand at 102.747 kb on + strand at 102.748 kb on - strand at 102.748 kb on - strand at 102.748 kb on - strand at 102.748 kb on - strand at 102.748 kb on - strand at 102.768 kb on + strand at 102.768 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 99,018 + GFF1239 0.57 +0.9 99,019 - GFF1239 0.57 +0.1 99,019 - GFF1239 0.57 +2.0 99,019 - GFF1239 0.57 +1.9 99,183 + +1.0 99,183 + +0.7 99,183 + +1.9 99,183 + +0.9 99,183 + +2.4 99,184 - +0.5 99,184 - +2.1 99,184 - +2.6 99,194 + +2.0 99,194 + +0.9 99,194 + +0.9 99,195 - +1.3 99,195 - +1.3 99,195 - +1.7 99,953 + +0.9 99,953 + +2.4 99,953 + +6.7 99,953 + -0.1 99,953 + -0.1 99,953 + -0.0 99,954 - +0.6 99,954 - -2.2 99,954 - +0.0 100,267 + GFF1241 0.15 -0.8 100,267 + GFF1241 0.15 +0.2 100,268 - GFF1241 0.15 +1.0 100,268 - GFF1241 0.15 -0.7 100,394 - GFF1241 0.22 -0.1 100,403 - GFF1241 0.22 +0.1 100,403 - GFF1241 0.22 -0.2 100,438 + GFF1241 0.24 +1.5 100,438 + GFF1241 0.24 +1.1 100,759 + GFF1241 0.42 +0.5 100,760 - GFF1241 0.42 -1.5 101,254 + GFF1241 0.70 +0.1 101,254 + GFF1241 0.70 +0.6 101,255 - GFF1241 0.70 +0.4 101,255 - GFF1241 0.70 -0.0 101,567 - GFF1241 0.87 +0.2 101,567 - GFF1241 0.87 -0.6 101,713 + +1.4 101,862 + -0.2 101,863 - -0.4 102,177 + GFF1242 0.38 +0.8 102,178 - GFF1242 0.38 -0.8 102,273 + GFF1242 0.47 +1.0 102,273 + GFF1242 0.47 +0.4 102,274 - GFF1242 0.48 -1.1 102,366 + GFF1242 0.57 -0.0 102,367 - GFF1242 0.57 +1.3 102,471 + GFF1242 0.67 -0.0 102,666 + GFF1242 0.86 +0.5 102,667 - GFF1242 0.86 +0.7 102,667 - GFF1242 0.86 -0.4 102,747 + +0.4 102,747 + -1.8 102,747 + +0.7 102,747 + -1.1 102,747 + -0.3 102,748 - +0.1 102,748 - -0.8 102,748 - -0.7 102,748 - -0.0 102,748 - +0.4 102,768 + -0.6 102,768 + -0.2
Or see this region's nucleotide sequence