Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1237 and GFF1238 are separated by 5 nucleotides GFF1238 and GFF1239 are separated by 72 nucleotides GFF1239 and GFF1240 are separated by 8 nucleotides GFF1240 and GFF1241 are separated by 62 nucleotides
GFF1237 - FIG00932538: hypothetical protein, at 96,972 to 97,817
GFF1237
GFF1238 - Integral membrane protein, at 97,823 to 98,704
GFF1238
GFF1239 - FIG00933538: hypothetical protein, at 98,777 to 99,202
GFF1239
GFF1240 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 99,211 to 99,942
GFF1240
GFF1241 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 100,005 to 101,792
GFF1241
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 97.989 kb on + strand, within GFF1238 at 97.989 kb on + strand, within GFF1238 at 97.989 kb on + strand, within GFF1238 at 97.990 kb on - strand, within GFF1238 at 98.004 kb on + strand, within GFF1238 at 98.004 kb on + strand, within GFF1238 at 98.004 kb on + strand, within GFF1238 at 98.004 kb on + strand, within GFF1238 at 98.005 kb on - strand, within GFF1238 at 98.005 kb on - strand, within GFF1238 at 98.133 kb on + strand, within GFF1238 at 98.133 kb on + strand, within GFF1238 at 98.133 kb on + strand, within GFF1238 at 98.133 kb on + strand, within GFF1238 at 98.134 kb on - strand, within GFF1238 at 98.134 kb on - strand, within GFF1238 at 98.136 kb on + strand, within GFF1238 at 98.193 kb on + strand, within GFF1238 at 98.194 kb on - strand, within GFF1238 at 98.227 kb on - strand, within GFF1238 at 98.472 kb on + strand, within GFF1238 at 98.472 kb on + strand, within GFF1238 at 98.472 kb on + strand, within GFF1238 at 98.472 kb on + strand, within GFF1238 at 98.472 kb on + strand, within GFF1238 at 98.473 kb on - strand, within GFF1238 at 98.475 kb on + strand, within GFF1238 at 98.476 kb on - strand, within GFF1238 at 98.476 kb on - strand, within GFF1238 at 98.476 kb on - strand, within GFF1238 at 98.476 kb on - strand, within GFF1238 at 98.476 kb on - strand, within GFF1238 at 98.853 kb on + strand, within GFF1239 at 98.853 kb on + strand, within GFF1239 at 98.853 kb on + strand, within GFF1239 at 98.854 kb on - strand, within GFF1239 at 98.854 kb on - strand, within GFF1239 at 98.880 kb on + strand, within GFF1239 at 98.881 kb on - strand, within GFF1239 at 99.018 kb on + strand, within GFF1239 at 99.019 kb on - strand, within GFF1239 at 99.019 kb on - strand, within GFF1239 at 99.183 kb on + strand at 99.183 kb on + strand at 99.183 kb on + strand at 99.183 kb on + strand at 99.183 kb on + strand at 99.184 kb on - strand at 99.184 kb on - strand at 99.184 kb on - strand at 99.194 kb on + strand at 99.194 kb on + strand at 99.194 kb on + strand at 99.195 kb on - strand at 99.195 kb on - strand at 99.195 kb on - strand at 99.953 kb on + strand at 99.953 kb on + strand at 99.953 kb on + strand at 99.953 kb on + strand at 99.953 kb on + strand at 99.953 kb on + strand at 99.954 kb on - strand at 99.954 kb on - strand at 99.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 97,989 + GFF1238 0.19 -2.8 97,989 + GFF1238 0.19 +0.1 97,989 + GFF1238 0.19 -0.4 97,990 - GFF1238 0.19 -0.6 98,004 + GFF1238 0.21 +0.8 98,004 + GFF1238 0.21 -0.2 98,004 + GFF1238 0.21 -0.3 98,004 + GFF1238 0.21 +0.2 98,005 - GFF1238 0.21 -0.3 98,005 - GFF1238 0.21 -0.4 98,133 + GFF1238 0.35 +1.1 98,133 + GFF1238 0.35 -0.8 98,133 + GFF1238 0.35 -0.0 98,133 + GFF1238 0.35 +1.0 98,134 - GFF1238 0.35 -0.0 98,134 - GFF1238 0.35 -0.1 98,136 + GFF1238 0.35 -0.0 98,193 + GFF1238 0.42 +1.1 98,194 - GFF1238 0.42 +0.5 98,227 - GFF1238 0.46 -0.8 98,472 + GFF1238 0.74 -0.0 98,472 + GFF1238 0.74 +1.2 98,472 + GFF1238 0.74 -2.2 98,472 + GFF1238 0.74 -0.3 98,472 + GFF1238 0.74 -0.9 98,473 - GFF1238 0.74 +0.5 98,475 + GFF1238 0.74 +0.2 98,476 - GFF1238 0.74 -0.2 98,476 - GFF1238 0.74 -0.1 98,476 - GFF1238 0.74 -1.0 98,476 - GFF1238 0.74 -0.8 98,476 - GFF1238 0.74 +0.6 98,853 + GFF1239 0.18 +0.6 98,853 + GFF1239 0.18 +1.3 98,853 + GFF1239 0.18 +0.8 98,854 - GFF1239 0.18 +1.1 98,854 - GFF1239 0.18 +2.4 98,880 + GFF1239 0.24 +1.0 98,881 - GFF1239 0.24 +0.9 99,018 + GFF1239 0.57 +0.9 99,019 - GFF1239 0.57 +2.0 99,019 - GFF1239 0.57 +1.9 99,183 + +1.0 99,183 + +0.7 99,183 + +1.9 99,183 + +0.9 99,183 + +2.4 99,184 - +0.5 99,184 - +2.1 99,184 - +2.6 99,194 + +2.0 99,194 + +0.9 99,194 + +0.9 99,195 - +1.3 99,195 - +1.3 99,195 - +1.7 99,953 + +0.9 99,953 + +2.3 99,953 + +6.7 99,953 + -0.1 99,953 + -0.1 99,953 + -0.1 99,954 - +0.6 99,954 - -2.2 99,954 - +0.0
Or see this region's nucleotide sequence